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33 protocols using ab96899

1

Protein Expression Analysis Protocol

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Total protein was extracted using RIPA buffer (Sigma-Aldrich, USA). Protein concentration was quantified using the Pierce BCA protein assay (Thermo Scientific, USA). Proteins were separated using 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE), and then transferred to polyvinylidene difluoride membranes (Millipore, USA). After fixed in 5% skimmed milk, proteins were incubated with primary antibodies overnight at 4 °C. Then, the membranes were washed with PBS buffer, and incubated with goat anti-rabbit IgG H&L (1: 5000, ab96899, Abcam, USA) at room temperature for 1 h. β-actin was selected as the internal reference. Protein bands were visualized using Enhanced Chemiluminescence Detection Kit (Amersham Life Science, USA), and analyzed using Image J software. Primary antibodies were as follows: anti-fatty acid synthase (1:2000, ab128870, Abcam, USA), anti-SCD (1:2000, ab236868, Abcam, USA), anti-ACACA (1:2000, ab269273, USA), anti-ACAT1 (1:2000, ab154396, Abcam, USA), anti-OXSM (1:2000, ab229111, Abcam, USA), anti-VAPA (1:2000, ab176995, Abcam, USA), anti-CBFB (1:2000, ab133600, Abcam, USA) and anti-β-actin (1:2000, ab181092, Abcam, USA).
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2

Immunofluorescence Analysis of Tumor Immune Infiltrates

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The 29 NPC samples in our institutional cohort were divided into low and high expression groups based on the median value of IHC score of KIF18B. Eight samples were randomly selected from each group and conducted immunofluorescence staining. Briefly, the steps before incubation of secondary antibody were same as described in the above IHC protocol. The following primary antibodies were used: anti-FOXP3 (1:200, 98377S, Cell Signaling Technology), anti-CD8 (1:100, ZA-0508, OriGene), and anti-IBA-1 (1:200, 17198, Cell Signaling Technology). After incubation of primary antibodies, the slides were incubated with DyLight 488-labeled secondary antibody (1:500, ab96899, Abcam) in the dark at 37°C for 1h. Images were captured using immunofluorescence microscopy (Olympus, Tokyo, Japan). The quantification of cell numbers was carried out manually by counting the positive cells, while the immunofluorescence area was automatically identified using Image Pro Plus software (version 6.0.0.260).
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3

Immunofluorescence Staining of Macrophage Subsets

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Macrophages were washed with PBS three times. Four percent fixative solution (Solarbio, P1110) was added to the Petri dish for 10 min. Then, the solution was removed and cells washed three times. Next, 0.5% Triton X-100 (Solarbio, T8200) was added to the dish for 10 min. The solution was removed and cells washed three times. Five percent BSA (Solarbio, A8010) was added to the dish, and it was incubated for 1 h at room temperature. Then, primary antibodies were added to the M0 (GLRX1: 1:500, Abcam, ab45953; CD11b: 1:100, Proteintech, 66519-1-lg) and M2 macrophages (GLRX1: 1:500, Abcam, ab45953; CD163: 1:100, Abcam, ab156769) (18 (link)), respectively, and they were incubated overnight at 4°C. The solution was removed and cells washed three times. Secondary antibodies (DyLight 488 goat antirabbit polyclonal antibody, Abcam, ab96899, 1:200; DyLight 594 goat antimouse polyclonal antibody, Abcam, ab96881, 1:200) were used for 1 h at room temperature. The solution was removed and cells washed three times. Prolong™ Diamond Antifade Mountant with DAPI (Invitrogen, P36962) was added to the dish, and photos were taken with confocal microscopy.
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4

Immunofluorescence Assay of Caspase-3 in HK-2 Cells

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We inoculated HK-2 cells (3 × 104 cells/mL) into a 6-well plate with cover glass until the cell confluence reached about 70%. After the cells received different treatments, we fixed the cells with a 4% paraformaldehyde fixation solution (P0099, Beyotime, China) and then rinsed them thoroughly with phosphate buffer (PBS, SH30256.01, Hyclone, USA) for 3 times. After permeating the cell membrane with 0.5% Triton X-100 (T109027, Aladdin, China) in each hole, we sealed the cells with 3% BSA blocking solution (B265993, Aladdin, China) for 30 min. They were then reacted with anti-Caspase-3 antibody (1:500, ab32351, abcam, UK) at 4 °C overnight. After the cells in each well were reacted with goat anti-rabbit IgG H&L (DyLight® 488, 1:500, ab96899, abcam, UK), they were reacted with DAPI (ab104139, abcam, UK). In the end, after mounting, the cover glass was placed under the inverted fluorescence microscope (Ts2-FC, Nikon, Japan) to observe the results.
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5

Immunofluorescence Staining of IL-1RA

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For IF staining, sections were deparaffinized. After antigen blocking and retrieval, the sections were incubated with anti-IL-1RA antibodies (ab124962, Abcam, Cambridge, UK) at 4 °C overnight. They were rewarmed at RT for 30 min and thoroughly rinsed with PBS. Secondary Dylight 488 conjugated goat anti-rabbit antibodies (ab96899, Abcam, Cambridge, UK) were added and incubated at 37 °C for 1 h and stained with a fluorescent mounting medium with DAPI. A confocal imaging system (TCS-SP8, Leica, Germany) was used to analyze all images.
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6

Cholesterol Metabolism Regulation

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27-Hydroxycholesterol was provided by American Santa Cruz, and 27-OHC (10 mg) was completely dissolved in a suitable amount of ethanol, then divided equally in centrifuge tubes, with nitrogen gas blowing dry, and finally preserved at −80°C. The 27-OHC working solution contains 0.16% ethanol (v/v). Filipin III was from Cayman Chemical (#70440, Ann Arbor, MI, United States). Primary antibodies for Western blot included mouse anti-ABCA1 (Abcam, ab66217), rabbit anti-ABCG1 (Abcam, ab52617), mouse anti-Caveolin-1 (Abcam, ab17052), rabbit anti-Apolipoprotein E (Abcam, ab52607), mouse anti-LDLR (Millipore, MABS26), rabbit anti-ACAT1 (Abcam, ab168342), rabbit anti-CYP46A1 (Sigma–Aldrich, SAB2100523), mouse anti-KDEL (Santa Cruz, sc-58774), rabbit anti-flotillin (Abcam, ab41927), rabbit anti-SR-B1 (Abcam, 52629), mouse anti- N Cadherin (Abcam, ab98952), mouse anti-Aβ (Abcam, ab126649), and rabbit anti-LRP1 (Abcam, ab92544). Goat anti-mouse (#14709) and rabbit (#7074) biotinylated secondary antibodies were from Cell Signaling Technology. Antibodies for immunofluorescence included anti-CYP46A1 (Abcam, ab82814), goat anti-mouse (Abcam, ab150120), and goat anti-rabbit (Abcam, ab96899).
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7

Western Blot Analysis of Inflammatory Proteins

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Lung tissues and RAW264.7 cells were lysed in RIPA lysis buffer (P0013B,Beyotime) supplemented with protease inhibitor (ST505, Beyotime) and phosphatase inhibitor (P1050, Beyotime), and the protein concentration in each sample was determined using the BCA assay. Samples were denatured, fractionated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and transferred to polyvinylidene difluoride membranes. The non-specific membrane binding sites were blocked with 5% bovine serum albumin (BSA) for 1 h. Membranes were then incubated at 4°C overnight with primary antibodies (all diluted 1:1000) against the following proteins: IL-17 (ab79056, Abcam), MCP-1 (catalog no. 2029, CST),p38 MAPK (catalog no. 9212, CST), and phosphorylated (p)-p38 MAPK (catalog no. 4511, CST). Blots were washed several times with PBS buffer, then incubated for 1 h with goat anti-rabbit IgG secondary antibody (diluted 1:15000; ab96899, Abcam). The bands were visualized using a fluorescent scanner. As an internal reference, GAPDH was immunostained using an antibody (1:1000; catalog no. 5174, CST).
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8

Western Blot Analysis of SOCS1 Expression

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Tissues were lysed using lysis buffer (Beyotime, Beijing, China). Protein concentrations were measured with a BCA kit (#ab102536, Abcam, UK). 40 µg protein was separated using SDS-PAGE, and transferred to a PVDF membrane (Millipore). The proteins were blocked with TBST buffer (#ab64202, abcam, UK) for 2 h. After washing twice, proteins were incubated with primary antibodies at 4°C overnight, and then incubated with secondary antibodies for 2 h after washing. Proteins were detected with an enhanced chemiluminescence detection kit (Thermo Fisher Scientific, USA), and bands was analyzed with ImageJ software. The antibodies used are: Rabbit monoclonal to SOCS1 (ab280886, 1:1000, abcam, UK), Rabbit monoclonal to GAPDH (ab181602, 1:1000, abcam, UK), Goat Anti-Rabbit IgG (ab96899, 1:2000, abcam, UK). GAPDH was used as a housekeeping control gene in the experiments as described previously [26 (link)].
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9

Immunofluorescence Assay for AdipoR1 and AdipoR2 Expression

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OCCM-30 cells were cultured overnight on sterile Falcon™ Chambered Cell Culture Slides (354108, Fisher Scientific) and further fixed with 4% paraformaldehyde (30525-89-4, Sigma-Aldrich) for 10 min at room temperature. Cells were permeabilized with 0.5% Triton™ X-100 Surfact-Amps™ Detergent Solution (28313, Thermo-Fisher) for 20 min. Then, cells were incubated in blocking buffer containing 10% goat serum, 0.3 M glycine, 1% BSA (071M8410, Sigma) and 0.1% Tween-20 (P1379, Sigma-Aldrich) for 30 min at room temperature and further incubated with primary antibodies AdipoR1 (ab70362, Abcam) (dilution 1:250) or AdipoR2 (ab77612, Abcam) (dilution 1:250) at 4°C overnight. The secondary antibodies DyLight 488 polyclonal goat anti-rabbit (ab96899, Abcam) (dilution 1:500) or donkey anti-goat Alexa Fluor 647 (ab150131, Abcam) (dilution 1:500) conjugated to fluorescein isothiocyanate were used. After washing with 1× phosphate-buffered saline (PBS) (10010023, Thermo-Fisher), samples were mounted using a fluorescent Mounting Medium with DAPI (ab104139, Abcam). Staining was analyzed using a high-resolution fluorescence microscope (Leica Microsystems, Wetzlar, Germany) and photographed.
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10

Western Blot Protein Quantification

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The total proteins isolated from cells were measured using BCA kits and lysis buffer (RIPA, Cell Signaling) (Beyotime, China). All the protein samples (30 μg) were split up using an SDS polyacrylamide gel and then conveyed to polyvinylidene difluoride (PVDF) membranes (Invitrogen). After blocking at room temperature with 5% skim milk for 1 h in PBS and then at 4°C overnight, the PVDF membranes were protected with primary antibodies anti-RhoB (ab155149; 1 : 1000; Abcam) and anti-GAPDH (ab9485; 1 : 1000; Abcam). Membranes were washed, and then, a goat anti-rabbit secondary antibody preincubated for an hour and labeled with horseradish peroxidase (ab96899; 1 : 1000; Abcam) was used and then rinsed with PBS. ECL detection reagent was used to visualize the protein bands (Pierce, Rockford, IL, United States). ImageJ software was used to quantify western blot densitometry bands.
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