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Reliance one step multiplex rt qpcr supermix

Manufactured by Bio-Rad
Sourced in United States

The Reliance One-Step Multiplex RT-qPCR Supermix is a reagent solution designed for the amplification and detection of multiple RNA targets in a single reverse transcription and real-time PCR reaction. The supermix contains all the necessary components, including reverse transcriptase, DNA polymerase, and fluorescent probes, to enable reliable and efficient one-step multiplex RT-qPCR analysis.

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7 protocols using reliance one step multiplex rt qpcr supermix

1

Viral RNA Extraction and POWV II Quantification

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Total RNA was isolated by using the Mag-Bind Viral RNA 96 kit (Omega Biotek; Norcross, GA, USA) on Kingfisher flex (Thermo Fisher Scientific; Waltham, MA, USA). Briefly, tick leg or mice brain or spleen tissues were placed in tubes containing 250 µl PBS-G (PBS with 0.5% gelatin, 30% rabbit serum and 1% 100× antibiotic–antimycotic [10,000 μg/ml of streptomycin and 25 μg/ml of amphotericin B]) and a stainless-steel ball bearing and macerated using a mixer mill. A 50-µl aliquot of homogenate was used for the RNA extraction following the protocol of the kit’s manufacturer (Omega Biotek). RT-qPCR was performed on a Bio-Rad C1000 Touch system with a CFX96 optical module using the Reliance One-Step Multiplex RT-qPCR Supermix (Bio-Rad Laboratories, Inc.; Hercules, CA, USA) with the following cycline parameters: reverse transcription at 55 °C, 15 min; then 95 °C, 10 min; followed by 95 °C/15 s and 60 °C/30 s for 40 cycles. The primer/probe set used to target the 3′-untranslated regions of POWV II was as previously reported [21 ]. Quantification of POWV II genome equivalents was performed using a previously developed assay with the same reagents and cycling parameters as described above [22 (link)].
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2

Drosophila Protein Signaling Pathway Protocol

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Reagents were obtained from the following sources: HRP-labeled anti-rabbit secondary antibody and the antibodies against Drosophila Phospho-70 S6 Kinase (Thr398) (#9209), Akt (#9272), phosphor-ERK (#9101), ERK (#4695), Akt (#9272), MYC (#2278), and the FLAG (#2368) epitope from Cell Signaling Technology (CST); Anti-Green Fluorescent protein (GFP) antibody from Aves Labs (GFP-1020); 8D12 Anti-Repo antibody from Developmental Studies Hybridoma Bank (DSHB); Alexa 488-, 568-, and 647-conjugated secondary antibodies and Complete Protease Cocktail from Roche; Schneider’s medium and Inactivated Fetal Bovine Serum (IFS) from Invitrogen; amino-acid-free Schneider’s medium from US Biologicals; [3H]-leucine from American Radiolabeled Chemicals, Inc.; leucine from Sigma (L8912); rapamycin from LC Laboratories (#R-5000); and Reliance One-Step Multiplex RT-qPCR Supermix from BIO-RAD. Fresh apples (Gala) were from Star Market. The dS6K antibody was a gift from Mary Stewart (North Dakota State University) and the Drosophila Sestrin antibody one from Jun Hee Lee (University of Michigan).
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3

Precise Gene Expression Quantification

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RNA was extracted from the proximal colon and distal ileum using Qiagen RNeasy Mini Kit (Qiagen) and treated with DNase (Qiagen) according to the manufacturer’s protocol. Probe-base qPCR assay was performed using Reliance One-Step Multiplex RT-qPCR Supermix (Biorad) and predesigned qPCR primers and probes targeting Dhps (IDT; Assay ID: Mm.PT.58.5299492), Smox (IDT; Assay ID: Mm.PT.58.11011908), and Odc1 (IDT; Assay ID: Mm.PT.58.7815184.g). Tbp (IDT; Assay ID: Mm.PT.39a.22214839) was used for the reference gene. Cycling protocol of 1 × 50°C reverse transcription step for 10 min, 1 × 95°C DNA polymerase activation and template denaturation step for 10 min, 40 × 95°C template denaturation for 10 s and 60°C annealing and extension for 30 s.
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4

Quantifying SARS-CoV-2 RNA by RT-qPCR

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RT-qPCR was used to determine SARS-CoV-2 RNA copy numbers using Reliance One-Step Multiplex RT-qPCR Supermix and CFX Connect (Bio-Rad Laboratories, Hercules, CA) according to the manufacturer’s protocols. N gene-specific primer and probe sets for RT-qPCR assays and the SARS-CoV-2 plasmid (positive control) were purchased from IDT (Table S3). Copy numbers of SARS-CoV-2 were determined based on the regression line (y = -3.3125x + 40.527), which was generated using the serial-diluted plasmids and the N2-primer set.
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5

Quantifying Mitochondrial Dynamics Genes

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mRNA levels of genes in tibialis anterior from WT and SKMiPLA2γKO mice were determined by quantitative real-time PCR, which was performed by the Genome Engineering and Stem Cell Center (GESC) at Washington University. Briefly, total RNA was extracted from TA tissues using TRIzol™ Reagent (Thermo Fisher Scientific). Quantitative RT-PCR was performed as one-step using Reliance One-Step Multiplex RT-qPCR Supermix (Bio-Rad) on QuantStudio™ 3 Real-Time PCR System according to manufacturer’s instructions. The commercially available primers for the following mouse genes were purchased from Thermo Fisher Scientific: Drp1 (aka Dnm1l), Mm01342903_m1; Mfn1, Mm00612599_m1; and Opa1, Mm00453879_m1. Tissue mRNA levels were normalized to the level of an internal reference gene (mouse Ppia) in the same tissue sample. Relative gene expression levels were calculated using the 2-ΔΔCt method.
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6

SARS-CoV-2 RNA Extraction and Detection

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Severe acute respiratory syndrome coronavirus 2 RNA from cell culture supernatant samples was isolated using AVL buffer and the QIAamp Viral RNA Kit (Qiagen) according to the manufacturer’s instructions. Intracellular RNAs were isolated using the RNeasy Mini Kit (Qiagen) as described by the manufacturer. For detection of intracellular and extracellular SARS-CoV-2 genomic RNA, primers and dual-labeled probes were used (Supplementary Table 2). Multiplex RT-qPCR assay were carried out using Reliance One-Step Multiplex RT-qPCR Supermix (Bio-Rad) or LightCycler Multiplex RNA Virus Master (Roche). SYBR green based RT-qPCRs were performed using Luna Universal One-Step RT-qPCR Kit (NEB) (Kim et al., 2020 (link); Shin et al., 2020 (link); Wolfel et al., 2020 (link); Kohmer et al., 2021 (link)).
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7

One-step RT-qPCR for SARS-CoV-2 detection

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Real-time RT-PCR reaction mix containing 1 x Reliance One-Step Multiplex RT-qPCR Supermix (BioRad), 0.9 μM PCR forward primer, 0.9 μM PCR reverse primer, 0.25 μM PCR probe, and RNA template was prepared. One-step RT-PCR was performed on a C1000 Touch Thermal Cycler (Bio-Rad) as follows: 50°C for 10 min, 96°C for 10 min, 45 cycles of 60°C for 2 min and 98°C for 30 s. Real-time readouts were acquired using the CFX96 Touch Real-time PCR System (Bio-Rad).
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