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11 protocols using coolpix 995 digital camera

1

PVX-based VIGS of SlSnRK1 in Tomato Fruits

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PVX-based VIGS of SlSnRK1 expression was performed in AC fruits at various developmental stages on different trusses on the same plants, and on different plants in repeated experiments as described (Manning et al., 2006 (link)). In each experiment, pedicels of 30–40 fruits at 5–20 d post-anthesis (DPA) were mock-injected with Tris–EDTA buffer or injected with PVX/SlSnRK1 transcripts. Tomato plants were grown and maintained in growth rooms at 25 °C with supplementary lighting to give a 16 h photoperiod. Fruits were daily examined and photographed with a Nikon Coolpix 995 digital camera.
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2

Visualizing Recombinant Virus Spread

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Virus-inoculated AC or N. benthamiana was routinely examined under long-wave length ultraviolet light (Upland UVP Model B 100AP) to check transient GFP expression and systemic spread of the recombinant viruses. Photographs were taken with a Zeiss Axiophot microscope with filters (excitation at 450–490 nm and long-pass emission at 520 nm or excitation at 546 nm and long-pass emission at 590 nm) through a Nikon Coolpix 995 digital camera (Li et al., 2011 (link)). Confocal imaging of the leaves was performed with a Zeiss LSM 710 three-channel microscope with an excitation light of 405 nm, and the emission was captured at 454–581 nm.
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3

Virus-Induced Silencing in Tomato Fruits

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PVX-based VIGS and Virus-induced transcriptional gene silencing in Cnr, rin and wild-type tomato (Solanum lycopersicum cv. Ailsa Craig) fruits were performed as described3 (link)22 (link). The carpopodium of tomato fruits at 5–15 days post anthesis was needle-injected with recombinant viral RNAs for each of the PVX-based VIGS constructs. Plants were grown in insect-free glasshouses at 25°C with supplementary lighting to give a 16-h photoperiod, examined and photographed with a Nikon Coolpix 995 digital camera.
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4

Osteoclastogenesis from Murine Bone Marrow

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Bone marrow cells were harvested from 4 male and 4 female littermate C57BL/6 mice at one month of age and seeded in α-MEM containing 15% heat-inactivated FBS at a density of 1×106 cells/cm2, and maintained in a humidified 5% CO2 incubator at 37°C. To induce expression of Rankl by adherent osteoblastic cells and differentiation of mononuclear precursors into osteoclast-like cells, cultures were exposed for 7 days to 1,25 dihydroxyvitamin D3, dissolved in 100% Et-OH and diluted to a concentration of 10 nM in α-MEM containing 15% heat-inactivated FBS [21] (link), [22] (link). Parallel control cultures were exposed to an equal volume of 100% Et-OH. To determine bone resorptive activity, cells were seeded on Osteo Assay Surface (Corning Life Sciences, Tewksbury, MA), cultured for 7 days under conditions favoring osteoclastogenesis and removed with bleach before von Kossa staining of the culture surface. Images of the stained surfaces were acquired with a Coolpix 995 digital camera (Nikon Inc., Melville, NY), imported in ImageJ v 1.48d (National Institutes of Health, Bethesda, MD) [23] and converted to 8-bit grayscale. Identical thresholds of gray intensity were set below the background of each image analyzed and resorbed area was defined as the area occupied by pixels with values of gray intensity below the preset threshold, determined with the measure function of ImageJ.
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5

Alcian Blue Staining Protocol

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Sixty milliliters of ethanol (98–100%) were mixed with 40 mL of acetic acid (98–100%). Ten milligrams of Alcian blue 8 GX (stable solution for 1 year) were dissolved in this solution. One hundred and twenty milliliters of ethanol were mixed with 80 mL of acetic acid (98%–100%) to obtain the bleaching solution.
The process for the assay is shown as follows: the culture medium was gently aspirated from a multiwell taking extreme care not to aspirate the spheroid-like structure. It was washed twice with phosphate buffer saline (PBS) 1× without Ca++/Mg++. A sufficient amount of neutral buffered formalin (10%) was added to cover the spheroid-like structure, and the mixture was incubated at room temperature for 60 min. Formalin was carefully aspirated and washed 2 times in H2O. Distilled water was carefully aspirated, and enough Alcian blue coloring solutions were added to generously cover the cartilage spheroids, as some evaporation occurred. The mixture was incubated overnight at room temperature and in the dark.
The Alcian blue stain solution was carefully aspirated, wash the cells were washed with the bleaching solution for 20 min. The washing step was repeated twice. The bleaching solution was carefully aspirated, and PBS was added.
The cells were then observed and photographed with a 5× magnification optical microscope equipped with a Nikon CoolPix 995 digital camera.
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6

Virus-Induced Gene Silencing in Tomato Fruits

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PVX-based VIGS in Cnr and AC fruits at various developmental stages on different trusses on the same plants and on different plants was carried out in repeated experiments as described by Chen et al. (2015b) . In each experiment, carpopodium of at least 40 fruits at 5 to 20 DPA were mock injected with Tris-EDTA buffer or injected with recombinant viral RNAs generated by in vitro transcription from each of the VIGS constructs. Tomato plants were grown and maintained in growth rooms at 25°C with supplementary lighting to give a 16-h photoperiod. Fruits were examined daily and photographed with a Coolpix 995 digital camera (Nikon).
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7

Biofilm Imaging in Porous Media

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Confocal laser scanning microscopy (CLSM) was used to observe the extent of biofilm growth on porous media after termination of experiments. Biofilm samples grown on sand were washed with phosphate buffered saline (PBS) and stained with 4',6-diamidino-2-phenylindole (DAPI) stain at a concentration of 300 µg/ml, made from 10 mg/ml stock solution (Biotium), using PBS as diluent. Samples were fixed onto glass slides using SlowFade Gold Antifade Reagent (Invitrogen), and air-dried. Glass beads were too big to mount on glass slides, therefore 0.5 g of beads were vortexed with PBS and stained with DAPI stain, and a drop was placed on a glass slide and left to air-dry. Once dried, the samples were covered with glass cover slips and fixed with nail varnish. Samples were viewed using a Leica SP5 Confocal Laser Microscope. Stacks of images were processed to 3D images using ImageJ software. Scanning electron microscopy (SEM) images were taken of porous media from the top and bottom sections of each column. Porous media was transferred with a spatula onto 1 cm diameter SEM stubs, and gold sputtered using a BAL-TEC SCD 050 Sputter Coater. Samples were viewed with a Philips XL30CP scanning electron microscope in secondary electron imaging mode.
Surfaces of porous media were visualized using a Nikon SMZ800 stereo microscope with attached Nikon Coolpix 995 digital camera.
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8

Dermoscopic Features of Livedoid Vasculopathy

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Nine patients with biopsy-proven livedoid vasculopathy who presented to the Dermatology department of Kaohsiung Medical University Hospital were included in this study. Dermoscopic assessment was performed for all livedoid vasculopathy skin lesions in the 9 patients. This study was approved by the institutional review board of Kaohsiung Medical University Hospital.
All skin lesions were examined by board-certified dermatologists who had >10 years of experience with dermoscopy. Dermoscopic examination was performed using a DermLite Foto polarized light dermoscope (10× magnification; 3Gen, Dana Point, CA) attached to a Nikon Coolpix 995 digital camera (3× optical zoom; Nikon, Tokyo, Japan). The DermLite Foto dermoscope contains polarization filters, and therefore immersion liquids do not need to be applied during skin examination. All dermoscopic images were projected onto a 30-inch liquid crystal display screen for more detailed visualization.
All skin biopsy specimens were stained with hematoxylin-eosin for histopathologic evaluation. Evaluation of pathology specimens was performed by 2 dermatologists who were experienced with dermatopathology. For correlation of dermoscopic features and pathological characteristics, skin biopsies were performed at the time of dermoscopy, in the same area of dermoscopic examination.
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9

Generating hTERT Immortalized Fibroblasts

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hTERT immortalised fibroblast cell lines were generated from chronic wound and patient matched normal fibroblast cell strains (strains described previously [22 (link)]). Fibroblasts were transfected with the hTERT containing retroviral vector pBABE-hTERT. Positively transfected cells were selected by the addition of puromycin to the growth medium (Fibroblast-Serum Containing Medium [F-SCM + Puro], consisting of Dulbecco’s Modified Eagle’s Medium (DMEM) supplemented with l-glutamine (2 mM), antibiotics (100 U/mL penicillin G; 100 µg/mL streptomycin sulphate; 0.25 µg/mL amphotericin B), puromycin 1 µg/mL, and 10% (v/v) foetal calf serum [FCS]; all of the reagents supplied by Invitrogen, Paisley, UK). Upon reaching 80–90% confluence, fibroblast populations were passaged at a ratio of 1:3.
The populations doublings (PDs) of the cell populations were derived by direct counting of cell numbers at each passage then calculation using the method previously described [54 (link)]. Cells in monolayer culture were digitally imaged 24 h after passage using a Nikon Coolpix 995 digital camera (Nikon, Kingston-upon-Thames, UK) attached to an Olympus CK2 microscope (×10 objective lens, F-Stop 3.5) (Olympus, Southall, UK).
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10

Characterization of Synthesized Materials

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1H-nuclear magnetic resonance (NMR) spectroscopy using an MR400 DD2 (Agilent Technologies, Inc., Santa Clara, CA, USA) NMR spectrometer, differential scanning calorimetry (DSC) using a Q-10 (TA Instruments, Inc., New Castle, DE, USA), and polarized optical microscopy (POM) images of LC cells using a Nikon Eclipse E600 POL (NIKON, Inc., Tokyo, Japan) equipped with a polarizer and Nikon Coolpix 995 digital camera (NIKON, Inc., Tokyo, Japan) were employed for the characterization of the synthesized materials. The static contact angles of water on the polymer films were determined using a Kruss DSA10 (KRÜSS Scientific Instruments Inc., Hamburg, Germany) contact angle analyzer equipped with drop shape analysis software (KRÜSS Scientific Instruments Inc., Hamburg, Germany). The contact angles for each sample were measured more than four times on three independently prepared films, and the average values were used. The ultraviolet (UV) stability test of the LC cells was conducted using a VL-6.LC lampmax = 365 nm, Vilber Lourmat, Paris, France) with intensities of 5, 10, and 15 mW/cm2 during the 30 min in order to corroborate the reliability to apply severe environment. The exposure dose of irradiated UV light on the LC cells was measured with a UV detector using GT-513 (Giltron, Seoul, Korea).
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