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9 protocols using 40 um cell strainer

1

Dissociation of Cell Samples

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Collagenase P was prepared to a 100mg/mL stock solution in HBSS. Chemical dissociation was performed using 0.25% Trypsin, Collagenase P (2mg/mL), 1 mM EDTA (pH 8.0), and PBS for 15min at 28C with gently pipetting every 5 min. Dissociation was quenched using 5% calf serum, 1mM CaCl2, and PBS. Cells were washed and resuspended in chilled (4C), 1% calf serum, 0.8 mM CaCl2, 50 U/mL penicillin, 0.05 mg/mL streptomycin, and DMEM and passed through a 40uM cell strainer (Falcon) and diluted into PBS + 0.04% BSA to reduce clumping. A final sample cell concentration of 2000 cells per microliter, as determined on a Biorad TC20 cell counter, was prepared in PBS + 0.04% BSA for cDNA library preparation.
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2

Lipofectamine-Mediated Transfection Workflow

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One day prior transfection, cells were passed through a 40um cell strainer (Falcon; Cat. No 352340) and counted with Bio Rad TC10. In each well (uncoated 6-well plates, Thermo Scientific Nunc; Cat. No. 2020–10) 300,000 cells were seeded and incubated for another 24 hours. On the day of transfection DNA was diluted in 250ul Opti-MEM I Reduced Serum (Gibco, Life Technologies Cat no. 31985–962) and mixed with a 244ul Opti-MEM I/6ul Lipofectamin 2000 Transfection Reagent (Thermo Fischer; Cat. no. 11668019). After a 20 minutes’ incubation step at room temperature, the transfection mix was added drop wise to the wells. The cells were incubated for another 72 hours before being measured by flow cytometry.
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3

Isolation of Mouse Lung Endothelial Cells

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Mouse lungs were collected and minced into small pieces. Lungs were incubated in digestion buffer (5 ml of DMEM supplemented with 5 mg of collagenase I (Worthington LS004196), 10ul of 1 M Ca2+ and 10ul of 1 M Mg2+) for 1 h at 37 °C with shaking every 10 min. Once fully lysed, lung lysates were filtered through a 40um cell strainer (Falcon, 352340) into a solution of 3 ml FBS. Samples were centrifuged for 10 min at 200 g, and pellets were resuspended in PBS 0.1%BSA. In the meantime, rat anti-mouse CD31 (BD Pharmingen, 553370) was incubated with sheep anti-rat IgG magnetic dynabeads (Invitrogen, 11035) in a solution of sterile PBS 0.1%BSA (120ul of beads, 24 ul of antibodies in 12 ml PBS 0.1%BSA). Solutions were place under gentle rotation at room temperature for 2 h to allow proper coupling of antibodies and beads. Coupled beads were next isolated using a magnetic separator and incubated in the resuspended lung lysate for 30 min. After 5 washes with PBS 0.1%BSA, beads were separated using magnetic separator and seeded in 60 mm dishes containing mouse lung endothelial cell media (DMEM high glucose, 20%FBS, 1% Penicillin Streptomycin, 2% mitogen (Alta Aesar BT203). Purified endothelial cells were cultured at 37 °C and 5% CO2 until confluence was reached, and then harvested.
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4

Dissociation and Sorting of Organoid Cells

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For dissociation of uncultured cells from organoids, organoids were digested with 0.5% trypsin/EDTA for 10min at 37C with agitation. After trypsin treatment, organoids were disrupted by vigorous shaking for 30sec. Then, cells were passed through 40um cell strainer (BD Falcon). Dissociated uncultured cells from breast organoids and 4th passage HMEC were stained with anti-CD133-PE (Biolegend, clone7) and CD271 (Biolegend, clone ME20.4) by following standard flow cytometry protocol. Cells were sorted by AriaIII (Becton Dickinson).
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5

Influenza-Specific Cytotoxicity Assay

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This assay was performed as described elsewhere [17 (link)], with minor modifications. Briefly, to prepare target cells, splenocytes from naive C57BL6 mice were harvested and red blood cells lysed. Half of the cells were loaded with influenza SA/wt virus at 0.5 MOI for one hour in complete RPMI-1640 medium without fetal bovine serum (FBS) at 37°C. The remaining cells were mock-loaded with diluted normal chicken egg allantoic fluid in culture medium. After incubation, mock- and virus-loaded cells were washed and stained with 20 mM and 2 mM of carboxyfluorescein succinimidyl ester (CFSE), respectively. Next, target cells were washed with Hanks balanced salt solution and filtered thought 40 um cell strainer (BD Bioscience, USA). Then mock- and virus-loaded target cells were mixed in a 1 : 1 ratio. 1.5 × 106 target cells were administered in 100 μl to anesthetized mice on day 42 after the primary immunization, by retroorbital injection. Next day, the mice were sacrificed and splenocytes were harvested and processed by flow cytometry. Cytotoxicity was presented as virus- to mock-loaded cell count ratio.
Statistical analysis of the results was carried out using GraphPad Prizm 6 and Statistica 10 software. The nonparametric Mann–Whitney Test and Kruskal-Wallis test were applied for data comparison. p value < 0.05 was considered to be statistically significant.
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6

Isolation of Adult Fibroblasts from Transgenic Mice

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For isolation of adult fibroblasts, the respective organs were derived from 1-3 month-old double transgenic mice (Nkx2.5-EYFP/rtTA). The organs were washed with PBS and minced in fibroblast medium (DMEM, 10% FBS, 1% NEAA/L-glutamine/Pen/strep) to obtain tissue pieces around 1mm3 in size. These were briefly trypsinized (0.25% trypsin-EDTA) for 10 minutes. Explants were then plated on 0.1% gelatin coated dishes in fibroblasts medium for 10-12 days. Fibroblasts migrated from explants were harvested, filtered through a 40uM cell strainer (BD Biosciences) to avoid contamination of heart tissue, passaged 1-2 times and frozen or used for experiments.
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7

DNA Content Analysis of hPSCs

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For DNA content analysis, hPSCs cells were dissociated by TrypLE Express (Invitrogen) and fixed with 70% EtOH. Propidium iodide was used to for H1 and HUES8 cells and Hoechst 33342 (both Sigma) for FUCCI-H9 cells for 30 min at 37 oC to stain DNA. Samples were then fixed with 2% Paraformaldehyde/PBS (PFA), washed and filtered through 40 um cell strainer (BD Biosciences) before flow cytometry. FACS analysis was performed using LSRII (BD Biosciences) and analyzed using FACSDiva software. Gates were set with reference to negative controls.
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8

Isolation of Endometrial Mononuclear Cells

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Endometrial samples were digested for 60 min at 37 °C with 5 mg/mL of collagenase type I (Worthington, USA), 4 mg/mL of DNase 1 (Worthington), and 500 mM glucose (Sinopharm, China), with intermittent trituration every 20 min. The cell suspension was passed through a 40um cell strainer (BD Biosciences), washed in bench medium comprising 5% newborn calf serum (Sigma-Aldrich), 1% antibiotic/ antimycotic (Gibco) in DMEM/F12 (Gibco) before centrifuging over Ficoll® Paque Plus (GE Healthcare) at 460 g, 15 min, 20 °C with brakes off. The mononuclear cells were collected, washed with bench medium before suspension in 2% fetal bovine serum (BSA, Sigma-Aldrich), in PBS and counted.
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9

Quantification of Lung Immune Cells

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Antibodies with specificity for CD4, FoxP3, CD 206 and F4/80 were obtained from eBioscience. For cell number quantification, PE, PerCP and APC labeled counting beads (Invitrogen) were used. Explanted lungs were digested in collagenase containing PBS for 60 minutes at 37C. Single cell suspension was obtained by passing the cells through 40 um cell strainer (BD). For intracellular cytokine staining, cells were stained for CD4, fixed, and permeabilized using the Fix&Perm kit (BD) and stained with antibody to FoxP3. Cells were analyzed on a 4-color FACS Calibur instrument (BD) with FlowJo version 8.8.
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