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7 protocols using anti vdac1

1

Immunoblotting Protocol for Protein Detection

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For immunoblotting, samples resolved by SDS-PAGE were transferred onto 0.2 μm nitrocellulose membranes (Bio-Rad, cat# 1620112). Membranes were blocked with 5% non-fat milk, and then incubated with the appropriate primary antibodies: anti-HA (Sigma-Aldrich, cat# H3663), 1:5000; anti-Flag (Sigma-Aldrich, cat# F1804), 1:5000; anti-ICDH (Xu et al., 2010 (link)), 1:10,000; anti-tubulin (DSHB, E7) 1:10,000; anti-PDHA1 (ProteinTech, cat# 18068-1-AP), 1:5000; anti-ATPB (ProteinTech, cat# 17247-1-AP), 1:2000; anti-TOM20 (ProteinTech, cat# 11802-1-AP), 1:5000; anti-VDAC1 (ProteinTech, cat# 55259-1-AP), 1:2000; anti-Cyto c (Santa Cruz Biotechnology, cat# sc-13560), 1:1000; anti-Calnexin (ProteinTech, cat# 10427-2-AP), 1:2000; anti-ANT1/2 (ProteinTech, cat# 17796-1-AP), 1:1000; anti-GM130 (BD Biosciences, cat# 610822), 1:2500; and anti-ADPR (Sigma-Aldrich, cat# MABE1016), 1:1000. Membranes were then incubated with an appropriate IRDye infrared secondary antibody and scanned by using an Odyssey infrared imaging system (Li-Cor’s Biosciences).
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2

Mitochondrial Dysfunction and Cell Death

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TMZ, Compound C, AICAR, Mdivi1, MG132 and WY14643, were purchased from MedChemExpress company. MTT and N‐Acetyl‐L‐cysteine (NAC) were purchased from Sigma‐Aldrich. MitoTracker™ Red FM (M22425), Hoechst 33342 (H1399) and anti‐Ubiquitin WB Antibody (13–1600) were purchased from Invitrogen (Thermo Fisher Scientific, Inc.) (1:1,000). Anti‐phospho‐Ubiquitin (Ser65) (ABS1513‐I) was purchased from Merck KGaA company (1:1000). Anti‐P53 (21891–1‐AP), anti‐PINK1 (23274–1‐AP), anti‐Parkin (14060–1‐AP), anti‐Drp1 (12957–1‐AP), anti‐Opa1 (27733–1‐AP), anti‐Mfn1 (13798–1‐AP), anti‐Mfn2 (12186–1‐AP), anti‐Caspase‐9 (10380–1‐AP), anti‐BAX (50599–2‐Ig), anti‐Caspase‐3 (19677–1‐AP), anti‐VDAC1 (10866–1‐AP), anti‐Lamin B (12987–1‐AP), anti‐Cytochrome c (10993–1‐AP), and anti‐β‐actin (60008–1‐Ig) were purchased from ProteinTech Group, Inc., (Chicago, IL, USA) (1:1,000). Anti‐γ‐H2A.X (ab81299) was purchased from Abcam (1:1000). Anti‐AMPKα (2532) and p‐AMPKα (50081) were purchased from Cell Signaling Technology, Inc. (Massachusetts, USA) (1:1000). Anti‐phospho‐DRP1(Ser616) (DF2972) was purchased from Affinity Biosciences (1:1000). Anti‐phospho‐DRP1(Ser637) (6319S) was purchased from Cell Signaling Technology, Inc. (1:1,000).
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3

Western Blot Protein Analysis Protocol

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Cells were lysed in RIPA lysis buffer and the protein concentration of the cell lysates determined by BCA Protein Assay (Thermo Scientific, 23227). Equal amounts of protein were loaded onto SDS-PAGE gel and transferred to PVDF membranes. Western blotting was performed using primary antibodies and secondary antibodies conjugated with HRP. For immunoblotting, the following antibodies were used: anti-SENP2 (Abcam, ab58418, 1:1000), anti-HIF-1α (Cell Signaling Technology, 79233, 1:1000), anti-phospho-threonine (Cell Signaling Technology, 9386, 1:1000), anti-Ubc9 (Cell Signaling Technology, 4786, 1:1000), anti-BrdU (Cell Signaling Technology, 5292, 1:1000), anti-ubiquitin (Cell Signaling Technology, 3936, 1:1000), anti-cleaved-caspase 3 (Cell Signaling Technology, 9661, 1:1000), anti-SUMO1 (Cell Signaling Technology, 4930, 1:1000), anti-SUMO2/3 (Cell Signaling Technology, 4971, 1:1000), anti-SENP1 (Cell Signaling Technology, 11929, 1:1000), anti-SENP3 (Cell Signaling Technology, 5591, 1:1000), anti-HA-Tag (Cell Signaling Technology, 3724, 1:2000), anti-Flag-Tag (Cell Signaling Technology, 14793, 1:2000), anti-hexokinase 1 (Proteintech, 19662-1-AP, 1:1000), anti-hexokinase 2 (Proteintech, 22029-1-AP, 1:1000), anti-VDAC1 (Proteintech, 10866-1-AP, 1:1000), anti-alpha tubulin (Proteintech, 66031-1-Ig, 1:5000), anti-GAPDH (Proteintech, 10494-1-AP, 1:5000).
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4

Cytokine Activation Pathway Analysis

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Phorbol-12-myristate-13-acetate (PMA), MSU, ATP, nigericin, poly A:T, Pam3CSK4, A9C, DIDS, and IAA94 were purchased from Sigma. MitoSox, MitoTracker Red, DAPI, MQAE, Lipofectamine RNAiMAX, Lipofectamine 2000, and M-MLV were from Invitrogen. Ultrapure LPS was obtained from Invivogen. SYRB Green was from TransGen Biotech. MnTBAP was from Santa Cruz. Salmonella is a gift from R.V. Bruggen. Anti-human cleaved IL-1β (2021, 1:1000 dilution) and anti-human caspase-1(2225, 1:1000 dilution) antibodies were purchased from Cell Signalling. Anti-human pro-IL-1β (60136-1-lg, 1:1000 dilution) anti-CLIC1(14545-1-AP, 1:500 dilution), anti-GAPDH (10494-1-AP, 1:1000 dilution), anti-VDAC1 (66345-1-lg, 1:1000 dilution), and anti-ATP1A1 (55187-1-AP, 1:1000 dilution) antibodies were from Proteintech. Anti-CLIC4 (SC-135739, 1:1000 dilution), anti-NEK7 (SC-50756, 1:500 dilution), and anti-ASC (rabbit, SC-22514, 1:400 dilution) antibodies were from Santa Cruz. Anti-ASC (mouse, 04–147, 1:1000 dilution) antibody was from Merck Millipore. Anti-CLIC5 (ACL-025, 1:250 dilution) antibody was from Alomone labs. Anti-mouse IL-1β (AF-401-NA, 1:1000 dilution) antibody was from R&D. Anti-mouse caspase-1 (p20) (AG-20B-0042, 1:1000 dilution) and anti-NLRP3 (AG-20B-0014, 1:1000 dilution) antibodies were from Adipogen. Anti-β-actin (P30002, 1:1000 dilution) antibody was from Abmart.
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5

Mitochondrial Regulation and Apoptosis Assay

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Western blotting was performed as described previously. The primary antibodies included anti-USP8 (Proteintech, USA), anti-PINK1 (Proteintech, USA), anti-Parkin(CST, USA), anti-Ubiquitin (Proteintech, USA), anti-GAPDH (Proteintech, USA), anti-VDAC1 (Proteintech, USA), anti-Fis1 (Proteintech, USA), anti-Drp1 (CST, USA), anti-phospho-Drp1 (Ser616, CST, USA), anti-Bax, anti-Bcl2, anti-Mfn2, anti-SOD, anti-Mn-SOD, anti-ATG7, anti-Beclin1 (all were from Proteintech, USA), anti-P62 (CST, USA), anti-LC3II/I (Proteintech, USA), anti-LC3B (Proteintech, USA), anti-CAT (Proteintech, USA), anti- cytochrome C (Proteintech, USA), anti-Cleaved-caspase9 (Proteintech, USA). Densitometry was conducted with the image processing and analysis program AlphaView.SA, and the data were expressed as relative units.
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6

Cisplatin and Epoxomicin-Induced Cell Death

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Cisplatin and epoxomicin were purchased from MedChemExpress (Monmouth Junction, NJ, USA). 3-(4, 5-Dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide (MTT) were purchased from Sigma-Aldrich (St. Louis, MO, USA). The following antibodies were used: anti-p62, anti-Mcl-1 (Abcam, Cambridge, MA, USA); anti-p53,anti-β-actin, anti-VDAC1, anti-LaminA/C, anti-βtublin, anti-p53, antiBax (Proteintech group, Inc., Rosemont, IL, USA); anti-PORLMT (Cell Signaling Technology, Danvers, MA, USA); anti-Bcl-2 (PTI BIO, Liaoning, China); anti-OXPHOS (Thermo Fisher Scientific, Waltham, MA, USA); All antibodies were diluted at a ratio of 1:1000.
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7

Antibody Generation and Immunoblotting Protocol

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Purified His6‐Larg1 was used to raise mouse‐specific antibodies using a standard protocol (Pocono Rabbit Farm & Laboratory). The antibodies were affinity‐purified as previously described
65 (link). For immunoblotting, samples resolved by SDS‐PAGE were transferred onto 0.2 μm nitrocellulose membranes (cat# 1620112; Bio‐Rad), which were blocked with 5% nonfat milk at room temperature for 1 h before being incubated with the appropriate primary antibodies: anti‐Flag (cat# F1804; Sigma‐Aldrich), 1: 5000; anti‐HA (cat# H3663; Sigma‐Aldrich), 1:5000; anti‐tubulin (E7; DSHB) 1:10,000; anti‐ADPR (cat# MABE1016; Sigma‐Aldrich), 1:1000; anti‐ICDH
66 (link), 1:10,000; anti‐PDHA1 (cat# 18068‐1‐AP; Proteintech), 1:5000; anti‐ATPB (cat# 17247‐1‐AP; Proteintech), 1:2000; anti‐TOM20 (cat# 11802‐1‐AP; Proteintech), 1:5000; anti‐VDAC1 (cat# 55259‐1‐AP; Proteintech), 1:2000; anti‐Cyto‐c (cat# sc‐13560; Santa Cruz), 1:1000; anti‐Larg1, 1:2500. Membranes were then incubated with appropriate IRDye infrared secondary antibodies and scanned by an Odyssey infrared imaging system (Li‐Cor's Biosciences).
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