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The A16110 is a laboratory equipment product from Thermo Fisher Scientific. It is designed for general laboratory use. The core function of the A16110 is to perform specific tasks within a laboratory setting. No further details about its intended use or capabilities are provided.

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8 protocols using a16110

1

Western Blot Analysis of GLUT1 Protein

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Harvested carotid arteries were homogenized in RIPA buffer (GeneDepot, Barker, TX, USA) and centrifuged at 13,000 rpm for 15 min at 4 °C. The protein concentration of supernatant was determined using bicinchoninic acid reagent (Thermo Fisher, Waltham, MA, USA). Proteins were separated using an 8% sodium dodecyl sulfate polyacrylamide gel electrophoresis gel and transferred to a polyvinyldine fluoride membrane (PVDF, Merck Millipore, Billerica, MA, USA). The membranes were blocked for 1 h with 5% skim milk in TBS-T (20 mM Tris-HCl (pH 7.6) containing 0.8% NaCl and 0.1% Tween 20). Then, the membranes were incubated with antibodies against GLUT1 (1:500 dilution, ab15309, Abcam, Cambridge, MA, USA) and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (1:2000 dilution, MAB374, Merck Millipore, Billerica, MA, USA). After washing with TBS-T, it was incubated with goat anti-rabbit or anti-mouse horseradish peroxidase conjugated secondary antibodies (1:30000 dilution, A16110 or 31430, Thermo Fisher, Waltham, MA, USA). To obtain protein bands, PVDF membranes were detected with X-ray film.
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2

SARS-CoV-2 RBD Protein Detection

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Cell lysates were obtained by diluting cell pellets in NuPAGE™ LDS Sample Buffer (4X) (Thermo Fisher Scientific, Cat# NP0007) and incubating at 99°C for 5 minutes, separated by electrophoresis in NuPAGE 4-12% polyacrylamide gels (Thermo Fisher Scientific, Cat#NP0321PK2) and then transferred to PVDF membranes. The membranes were probed with an anti-SARS-CoV-2 RBD rabbit polyclonal antibody (Sino Biological Inc., 40592-T62) followed by a goat anti-rabbit HRP-conjugated secondary antibody (Thermo Fisher Scientific, Cat# A16110, RRID AB_2534782). Membranes were developed by chemiluminescence using the Immobilon Western Chemiluminescent HRP Substrate (Millipore, Cat# WBKLS0500) and recorded using ChemiDoc MP Imaging System (Bio-Rad). An anti-GAPDH antibody (Cell Signaling Technology Cat# 2118, RRID:AB_561053) was used as loading control.
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3

Quantification of Protein Levels in Zebrafish and Human Cells

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Zebrafish protein was extracted from a pool of 15–20 de-yolked embryos and human protein was obtained from a confluent T75 flask of cultured fibroblasts, corresponding to approximately 106 cells. The protein extraction, quantification, and Western blot was performed as previously described [46 (link)]. Ten micrograms of total protein were used. The total protein in the blot was quantified using stain-free gels and low-fluorescence PVDF membranes (BioRad, Hercules, CA, USA). Here, the trihalo compound in the stain-free gel binds the tryptophane in the proteins. Following activation with UV light, the total protein present in the gels and in the membranes becomes visible and the membranes are imaged for subsequent quantification. The antibodies used were rabbit anti-PDH-E1α pSer232 (AP1036, Merk), mouse anti-PDHA1 (45-6600, Invitrogen), anti-active caspase3 (559565, BD Biosciences, Stockholm, Sweden), goat anti-rabbit-HRP (A16110, Invitrogen), and goat anti-mouse-HRP (G-21040, Invitrogen). The signal detection was achieved using the Clarity of Clarity Max ECL Western Substrate (170-5060 and 170-562, BioRad) and the BioRad ChemiDoc MP imaging system.
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4

Western Blot Analysis of Extracellular Vesicles

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Cells and 100,000 g cell pellets were lysed in RIPA buffer (10mM Tris-HCL, 1mM EDTA, 0.5mM EGTA, 1% Triton X-100, 0.1% sodium deoxycholate, 0.1% SDS, 140mM NaCl) with 1mM PMSF for 15min on ice. Protein was quantified using a Pierce BCA Protein Assay (Thermo Scientific). Lysates were resolved on a 4%–12% BisTris Bolt mini gel (Invitrogen) and transferred to nitrocellulose membrane. Membranes were blocked with 5% powdered milk or 5% BSA and washed with TBS-T (0.1% Tween-20, 137mM NaCl, 20mM Tris Base). Primary antibodies were used at manufacturer recommended dilutions and included anti-Alix (Abcam, EPR15314 ab186429, RRID: AB_2754981), anti-Tsg101 (Abcam, ab30871, RRID: AB_2208084), anti-CD63 (Abcam, EPR21151, ab217345, RRID: AB_2754982), anti-Syntenin (Abcam, ab19903, RRID: AB_445200), anti-Arf6 (Abcam, ab77581, RRID: AB_2058475), and anti-CD9 (Santa Cruz, KMC8.8, sc-18869, RRID: AB_2076043). Secondary HRP antibodies were goat anti-rabbit (Invitrogen, A16110, RRID: AB_2534782) and donkey anti-rat (Invitrogen, A18745, RRID: AB_2535522), and blots detected with Pierce ELC Western Substrate (Thermo) or SuperSignal West Femto Maximum Sensitivity Substrate (Thermo) on an AI600 imager (GE Healthcare). Bands were quantified using ImageJ, RRID:SCR_003070.
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5

Hippocampal Protein Analysis after Surgery

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Mice were sacrificed at 3 h after surgery with sevoflurane, and then the hippocampus was resected from the brain tissue. The experiment was described in our previous study [20 (link)]. Briefly, the hippocampus was homogenized in RIPA buffer, and the lysate was clarified by centrifugation at 12,000 × g, 4°C for 25 min. The protein concentration in the supernatant was measured, and an equivalent of was separated by 8–12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene fluoride (PVDF) membrane. Then, the membrane was blocked for 60 min and probed with primary antibodies at 4°C: goat polyclonal anti-P2X4 (NBP2-27567, 1 : 1000; Invitrogen, Carlsbad, CA, USA), rabbit monoclonal anti-NLRP3 (ab263899, 1 : 1000; Abcam, MA, USA), and anti-β-actin (A3853, 1 : 2,000; Sigma, St. Louis, MO, USA). Subsequently, the membranes were incubated with the corresponding secondary antibodies: rabbit anti-goat IgG (S0001, 1 : 10000; Affinity Biosciences, Cincinnati, OH, USA) and goat anti-rabbit IgG (A16110,1 : 10,000; Invitrogen). Subsequently, an enhanced chemiluminescence detection kit was utilized to observe the immunoreactive bands and determine the intensity of the band through optical density analysis. The relative protein levels were normalized to those of beta-actin.
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6

Viral Protein Expression Analysis

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All cells were either mock-infected or infected with the indicated viruses (MOI = 3.0). One day post-infection, the cells were lysed in 1% sodium dodecyl sulfate (SDS). Equivalent lysate volumes were separated on 10% SDS-polyacrylamide gels, then transferred to polyvinylidene difluoride (PVDF) membranes. Membranes were blocked with 5% non-fat milk dissolved in TBST (20M Tris, 150mM NaCl, 0.1% Tween 20, pH 7.4) for 1 hour and probed with one of the following primary antibodies: anti-PKR (sc-6282; Santa Cruz Biotechnology, Inc.), anti-phospho-PKR (ab32036; Abcam), anti-eIF2α or anti-phospho-eIF2α (Ser51) antibody (9722 and 9721, respectively; Cell Signaling Technology), anti-TRS1 99927 (link), or anti-actin (A2066; Sigma). All primary antibodies were diluted in TBST containing 5% BSA and incubated overnight at 4°C with the membrane. Membranes were washed with TBST three times for 5 mins and then incubated for 1 hour at room temperature with either donkey anti-rabbit or goat anti-mouse secondary antibodies conjugated to horseradish peroxidase (A16110 or 62–6520, respectively; Invitrogen) at 1:10,000 in TBST containing 5% (w/v) nonfat milk. Proteins were detected using the Amersham chemiluminescent detection system (GE Healthcare) according to the manufacturer’s recommendations. Membranes were imaged using the iBright Imaging System (Invitrogen).
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7

Western Blot Analysis of KCNQ2 and KCNQ3 Proteins

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Membrane and cytoplasmic proteins of oocytes were extracted using the Mem-PER Plus Membrane Protein Extraction Kit (Thermo Fisher Scientific). Equal amounts of protein samples were prepared by adding 2× Laemmli sample buffer (Bio-Rad) and loaded on SDS–polyacrylamide gel electrophoresis gels. After gel electrophoresis, membrane and cytoplasmic proteins were probed by Western blot following standard protocols. KCNQ2 and KCNQ3 proteins were detected with primary antibodies rabbit anti-KCNQ2 (1:1000 dilution; Abcam, ab22897) and rabbit anti-KCNQ3 (1:1000 dilution; Abcam, ab66640), respectively, followed by goat anti-rabbit secondary antibody (1:5000 dilution; Invitrogen, A16110), and visualized using enhanced chemiluminescence (ECL Western Blotting reagent, Thermo Fisher Scientific) and CL-XPosure Film (Thermo Fisher Scientific). β-Actin antibody (1:1000 dilution; Abcam, ab8227) was used to probe for control proteins.
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8

Western Blot Analysis of Extracellular Vesicles

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Cells and 100,000 g cell pellets were lysed in RIPA buffer (10mM Tris-HCL, 1mM EDTA, 0.5mM EGTA, 1% Triton X-100, 0.1% sodium deoxycholate, 0.1% SDS, 140mM NaCl) with 1mM PMSF for 15min on ice. Protein was quantified using a Pierce BCA Protein Assay (Thermo Scientific). Lysates were resolved on a 4%–12% BisTris Bolt mini gel (Invitrogen) and transferred to nitrocellulose membrane. Membranes were blocked with 5% powdered milk or 5% BSA and washed with TBS-T (0.1% Tween-20, 137mM NaCl, 20mM Tris Base). Primary antibodies were used at manufacturer recommended dilutions and included anti-Alix (Abcam, EPR15314 ab186429, RRID: AB_2754981), anti-Tsg101 (Abcam, ab30871, RRID: AB_2208084), anti-CD63 (Abcam, EPR21151, ab217345, RRID: AB_2754982), anti-Syntenin (Abcam, ab19903, RRID: AB_445200), anti-Arf6 (Abcam, ab77581, RRID: AB_2058475), and anti-CD9 (Santa Cruz, KMC8.8, sc-18869, RRID: AB_2076043). Secondary HRP antibodies were goat anti-rabbit (Invitrogen, A16110, RRID: AB_2534782) and donkey anti-rat (Invitrogen, A18745, RRID: AB_2535522), and blots detected with Pierce ELC Western Substrate (Thermo) or SuperSignal West Femto Maximum Sensitivity Substrate (Thermo) on an AI600 imager (GE Healthcare). Bands were quantified using ImageJ, RRID:SCR_003070.
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