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7 protocols using ab18196

1

Immunohistochemical Analysis of FOXK1

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Sections (4 µm) of TMAs were prepared and processed for the immunohistochemical analysis of FOXK1 (1:100; cat. no. ab18196; Abcam), which was carried out according to a previous study (13 (link)). A streptavidin-biotin kit (cat. no. KIT-9720; Fuzhou Maixin Biotech Co., Ltd.) was used to visualize antibody binding in these sections. Immunostaining of FOXK1 was evaluated by two individuals (ZGB and YJF) and a semi-quantitative scoring system was used in the present study, as previously reported (12 (link)). A weighted score was generated for each case ranging from 0 (0% of cells stained) to 300 (100% of cells stained at >3 intensity) as previous study described, a score of <75 was defined as low expression and that of ≥75 was defined as high expression (12 (link)).
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2

Immunohistochemical Analysis of FOXK1, Snail, MMP-2, and E-cadherin

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Sections were dewaxed with xylene and dehydrated with gradient alcohol. Sections were heated with 0.01 M citrate solution and allowed to cool down to room temperature after 20 min. After being maintained with 0.01 M PBS for 5 min, 3% hydrogen peroxide was added for 15 min to remove endogenous peroxidase. After PBS washing for 15 min, the sections were blocked with goat serum at 37°C for 20 min. The sections were incubated with primary rabbit anti-FOXK1 (1:1,000, ab18196; Abcam), rabbit anti-Snail (1:1,000, ab180714; Abcam), rabbit anti-MMP-2 (1:1,000, ab37150; Abcam), and rabbit anti-E-cadherin (1:500,000, ab76319; Abcam) overnight at 4°C. PBS served as NC instead of primary antibody. Sections were washed three times with PBS and incubated with goat anti-rabbit IgG (1:1,000, ab150117; Abcam) at 37°C for 30 min. Sections were rinsed with PBS for 15 min and incubated with streptavidin-biotin complex (Boster, Wuhan, P.R. China) at 37°C for 30 min. Color was developed by 3,3′-diaminobenzidine (DAB), followed by staining with hematoxylin for 1 min. Sections were washed with water for 1 min, followed by reaction in 1% hydrochloric acid and washing under running water. Sections were dehydrated and stained with saturated aluminum carbonate for 30 s, rinsed for 1 min, and treated with xylene for 15 min.
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3

Protein Expression Analysis by Western Blot

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Total protein was extracted from cells. Protein concentration was measured using a bicinchoninic acid kit (Thermo). Protein (30 μg) was subjected to polyacrylamide gel electrophoresis at 80 V for 35 min and 120 V for 45 min. After the electrophoresis was completed, proteins were transferred to a polyvinylidene fluoride membrane. Membrane was blocked by 5% skim milk at ambient temperature for 1 h. Membranes were incubated with rabbit anti-FOXK1 (1:1,000, ab18196; Abcam), rabbit anti-Snail (1:1,000, ab180714; Abcam), rabbit anti-MMP-2 (1:1,000, ab97779; Abcam), rabbit anti-MMP-9 (1:1,000, ab73734; Abcam), rabbit anti-Bcl-2 (1:2,000, ab182858; Abcam), rabbit anti-Bax (1:2,000, ab32503; Abcam), rabbit anti-E-cadherin (1:500,000, ab76319; Abcam), rabbit anti-N-cadherin (1:2,000, ab18203; Abcam), and rabbit anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH; 1:2,500, ab9485; Abcam) at 4°C overnight. Membranes were incubated with horseradish peroxidase-labeled goat anti-rabbit IgG antibody (1:10,000, ab6721; Abcam) for 1 h at ambient temperature after PBST washing. Membranes were washed three times with PBST buffer for 10 min each. After development with an optical luminometer (GE, Boston, MA, USA), gray intensity of protein bands was measured by Image ProPlus 6.0 (Media Cybernetics, Rockville, MD, USA).
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4

Protein Expression Analysis by Western Blot

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Total protein was extracted with RIPA lysis buffer, isolated on SDS‐PAGE gel, and transferred to a PVDF membrane. Membranes were sealed with 5% skim milk and incubated overnight with primary antibodies for FOXK1(ab18196),E‐cadherin (ab15148), N‐cadherin (ab207608), MMP2 (ab97779), MMP7 (ab205525), p‐Akt (ab38449), Akt (ab179463), p‐mTOR (ab109268), mTOR (ab109268), and GAPDH (ab8245) from Abcam (Cambridge, USA). Secondary antibodies were added for cultivation for 1 hour. The amount of protein was examined using chemiluminescence detection system.
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5

Autophagy Regulation in Cell Migration

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FBS and RPMI-1640 were purchased from Gibco (NY, USA). 3-MA and rapamycin were purchased from MCE (Shanghai, China). Autophagy double-labeled adenovirus (mRFP-GFP-LC3) was purchased from Hanbio Biotechnology Co., Ltd., and antibodies against E-cadherin (#14472), N-cadherin (#13116), Vimentin (#5741), LC3-I/II (#3868), β-actin (#4970) and Beclin1 (#3495S) were purchased from Cell Signaling Technology (Beverly, MA, USA). Antibodies against FOXK1 (ab18196) and MMP-9 (ab38898) were purchased from Abcam (Cambridge, MA, USA), and antibodies against MAZ (NB100-86984) were purchased from Novus (Columbus, MO, USA). The secondary antibodies used in this study included goat anti-mouse IgG-HRP (abs20001) and goat anti-rabbit IgG-HRP (abs20002), both of which are available from Absin (Shanghai, China).
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6

Immunohistochemical Analysis of Protein Expression

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The tissue microarray (TMA) was made by the Xinhua hospital. Immunohistochemistry was performed on 7-mm-thick TMA sections using the antibody against Aurora-A (ab13824, Abcam, 1:100 dilution), SOX8 (ab221053, Abcam, 1:100 dilution) and FOXK1 (ab18196, Abcam, 1:100 dilution). Each case was photographed and scored by two independent pathologists. The immunoreactive score (IRS) was multiplicity of the staining intensity and positive cancer percentage. Finally, the assessment of protein expression was defined as negative (≤1+) and positive (>2+ to ≤3+).
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7

Chromatin Immunoprecipitation of FOXK1

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Cells in logarithmic growth phase were incubated in formaldehyde at a nal concentration of 1%. The cells were incubated at 37 ℃ for 10 min to crosslink the cells with formaldehyde. Centrifugation was carried out at 4 ℃ and 2000 × g for 5 min. The supernatant was discarded, and SDS lysis buffer was added before sonication. The ultrasonication conditions were 4.5 s of ultrasonication with 9 s intervals for 14 cycles. The sonicated supernatant was centrifuged at 10,000 × g for 10 min at 4 ℃. The supernatant was divided into two tubes; anti-FOXK1 antibody (ab18196, Abcam, UK) was added to one tube, and negative control rabbit IgG (ab172730, Abcam) was added to the other tube, after which the tubes were incubated at 4 ℃ overnight. The next day, protein A agarose/salmon sperm DNA (cat # 16157, Sigma-Aldrich, USA) was added to each tube to precipitate the immune complexes. The supernatant was obtained by centrifugation at 10,000 × g for 5 min at 4 ℃ and removed. Nonspeci c complexes were eluted with an eluent and decrosslinked at 65 ℃ overnight. A gel recovery kit (B110092, Sango Biotechnology, Shanghai, China) was used to purify and recover DNA fragments for qPCR to detect the binding of FOXK1 and NEAT1.
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