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6 protocols using pyap1 s127

1

Immunofluorescence Analysis of Cell Signaling

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The IF analysis was performed by seeding the cells on the coverslips for 24 hrs followed by the treatment with either vehicle or Tea C-dots for 3 or 24 h. Upon treatment, cells were fixed in 4% paraformaldehyde for 15 min. IF images were taken based the methods we described previously39 (link), as well those described in the immunofluorescence general protocol (Cell Signaling Technology, Inc). Antibody used for F-actin was Alexa-Fluor-555-phalloidin (Molecular Probes Life technologies, 1:5000). Images were taken using Carl Zeiss Cell Observer SD confocal microscope. Primary antibodies used are: pAKT(S473) (Cell signaling), pYAP1(S127) (Cell signaling), SUMO1(Santa Cruz), SUMO2/3/4(Santa Cruz), ARF(Santa Cruz), YAP(Santa Cruz).
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2

Western Blot Analysis of Cellular Signaling

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Protein extracts were separated by SDS-PAGE, transferred onto PVDF membranes and probed with polyclonal rabbit antibodies against YAP1, pYAP1S127, pEGFRY1068, EGFR, pAKTS473, AKT, pERK, ERK, Slug, p73, Vimentin, CTGF, Lamin A/C, Tubulin, pATMS1981, ATM, pCHK2T68, CHK2, β-actin (Cell Signaling Technology) and γH2AX (EMD Millipore Corporation).
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3

Immunoblotting Analysis of Hippo Pathway

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Immunoblotting was carried out using a standard protocol and primary antibodies recognizing MOB1A (#E1N9D; Cell Signaling Technology), MST1 (#3682S; Cell Signaling Technology), LATS1 (C66B5; Cell Signaling Technology), YAP1 (#4912S; Cell Signaling Technology), pYAP1(S127) (#4911S; Cell Signaling Technology), TAZ (V386; Cell Signaling Technology), pTAZ (S89) (#75275; Cell Signaling Technology), CTGF (L-20; Santa Cruz Biotechnology), BIRC5 (71G4B7; Cell Signaling Technology), TOP2A (EP1102Y; Abcam), or TP63 (4A4; Abcam). Primary antibodies were detected using horseradish peroxidase (HRP)–conjugated secondary rabbit antibody (#7074; Cell Signaling Technology). Endogenous GAPDH (FL-355; Santa Cruz Biotechnology) was used as the internal control. Quantification of signal intensity was performed using Fujifilm Multi Gauge software.
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4

Cell Viability and Signaling Pathway Analysis

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RPMI 1640 medium and fetal bovine serum (FBS) were purchased from Hyclone (Logan, VI, USA). The bicinchoninic acid (BCA) protein assay kit, and goat-anti mouse IgM Alexa Flour 488 were purchased from Thermo Scientific (Waltham, MA, USA). The D-PlusTM CCK cell viability assay kit was purchased from Dongin LS (Seoul, Korea). Mitomycin C was obtained from Sigma (St. Louis, MO, USA). M-MLV reverse transcriptase and RNase inhibitor were purchased from Promega (Madison, WI, USA). dNTP mixture was obtained from TaKaRa Bio (Shiga, Japan). QGreenTM 2X SybrGreen qPCR Master Mix was purchased from CellSafe (Gyeonggi, Korea). Rabbit poly-clonal antibodies for FAK, p-FAK (Tyr925), Src, p-Src (Tyr416), p-ERK1/2 (Thr202/Tyr204), integrin α5, integrin β1, LATS1, p-LATS1 (Ser909), and p-YAP1 (S127) were purchased from Cell Signaling Technology (Beverly, MA, USA). Rabbit polyclonal antibodies for E-cadherin, β-catenin, ERK1, and CYR61, mouse monoclonal antibodies for YAP1 and α-tubulin, and goat anti-rabbit IgG Texas-Red were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Rabbit polyclonal antibody for G0S2 was obtained from CUSABIO (College Park, MD, USA). All other chemicals and reagents were of highest quality commercially available.
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5

Protein Expression Analysis Using RIPA Lysis

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Cells were collected after washes with PBS, lysed in 100 μL of radioimmunoprecipitation (RIPA) buffer containing protease inhibitors (Cat# 04693116001, Roche, Mannheim, Germany) and sonicated. Protein concentrations were determined using the PierceTM BCA Protein Assay kit (Cat# 23227, Thermo Fisher Scientific, IL, USA). Primary antibodies against GAPDH (Cat# 2118, RRID: AB_561053, Cell Signaling Technology, MA, USA), YAP1 (Cat# 4912, RRID: AB_2218911, Cell Signaling Technology, MA, USA), p-YAP1 (S127) (Cat# 4911, RRID: AB_2218913, Cell Signaling Technology, MA, USA), CYR61 (Cat# sc-374129, RRID: AB_10947399, Santa Cruz Biotechnology, CA, USA), CCNA2 (Cat# NBP1-31330, RRID: AB_10003781, Novus Biologicals, CO, USA), E2F1 (Cat# A300-766A, RRID: AB_2096774, Bethyl Laboratories, TX, USA), and FOXM1 (Cat# A301-533A, RRID: AB_999586, Bethyl Laboratories, TX, USA) were used.
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6

Immunoblotting for Protein Analysis

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Immunoblotting was performed as described previously [46 (link), 47 (link)]. The primary antibodies (p-LATS1, LATS1, p-YAP1 (S127), p-YAP1 (S397), YAP1, p-MOB1, MOB1, p-AMPK, AMPK, p27kip1, DNMT1) and peroxidase-conjugated secondary antibody were purchased from Cell Signaling Technology, Inc. The PP1a antibody was purchased from Santa Cruz Biotechnology. The signals were quantified using the G:Box gel imaging system by Syngene (Syngene, Fredric, MD).
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