The largest database of trusted experimental protocols

12 protocols using col 1

1

Protein Expression Analysis by Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein expression was assessed by western blot analysis as we described previously (Xiao et al., 2015b (link)). In brief, protein (50 μg) samples were resolved by 10% SDS–PAGE and transferred to PVDF membranes, then probed with various primary antibodies against E-cadherin (1:500), α-SMA (1:500), COL-I (1:500) (Santa Cruz Biotechnology) and β-catenin (1:500) (Sigma-Aldrich, St Louis, MO, USA). After incubating with an appropriate secondary antibody, the protein expression was detected by western blot analysis, as described previously (He et al., 2009 (link)). β-actin (Santa Cruz Biotechnology, 1:1,000) was used as an internal control.
+ Open protocol
+ Expand
2

Western Blot Analysis of PDLSC and JBMSC

Check if the same lab product or an alternative is used in the 5 most similar protocols
For western blot analysis, PDLSC and JBMSC sheets were lysed in lysis buffer (Sigma-Aldrich) supplemented with 1 mM of PMSF (Roche, Basel, Switzerland). The total protein concentrations were then measured using a bicinchoninic acid protein assay kit (Beyotime). Next, 40 μg of cell lysates were added to each lane of 10% SDS-PAGE gels, separated based on molecular weight, and electrotransferred to polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA). After blocking with 5% non-fat milk for 2 h, the membranes were incubated in specific primary antibodies against COL I, COL III, OPN, OCN, CEMP1 and CAP (all from Santa Cruz Biotechnologies) overnight at 4 °C. The membranes were then incubated in a horseradish peroxidase-conjugated anti-rabbit or anti-mouse secondary antibody (CoWin Biotech Co., Ltd., Beijing, China) for 1 h at room temperature. The membranes were developed using a Western Light Chemiluminescent Detection System (Peiqing, Shanghai, China). All assays were repeated in triplicate.
+ Open protocol
+ Expand
3

Histological Assessment of Articular Cartilage

Check if the same lab product or an alternative is used in the 5 most similar protocols
The knee joints were harvested and fixed in 4% paraformaldehyde overnight. Decalcification was conducted in 4% ethylene diamine tetraacetic acid (EDTA) for one month, with the decalcifying solution changed every 3 days. Decalcified joints were embedded in paraffin and used to cut 4 μm sections of the medial femoral condyle. The sections were stained using hematoxylin and eosin (HE), safranin O, and toluidine blue.
The severity of cartilage degeneration was assessed in histological sections using the modified Mankin score [35 (link)], which was scored based on: (1) surface integrity (score 0–10), (2) cellularity (score 0–4), (3) cell clones (score 0–4), and (4) Safranin O staining (score 0–5). A higher score indicated a greater level of cartilage degeneration.
Immunohistochemical staining was conducted using the histological sections. Briefly, after deparaffinization, sections were incubated with 0.3% hydrogen peroxide for 30 min and treated with hyaluronidase for 60 min. The sections were then incubated with COL-I or COL-II monoclonal antibodies (Santa Cruz Biotechnology, Dallas, TX, USA). All antibody dilutions were made in PBS. After an overnight reaction with the primary antibody at 4 °C, sections were incubated with labelled polymer-HRP anti-mouse IgG at room temperature for 30 min.
+ Open protocol
+ Expand
4

Quantifying SIRT-1 and Collagen I Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
After the diverse treatments, their effect on the sirtuin 1 (SIRT-1) expression and collagen type I (Col I) production was investigated by immunohistochemistry after 3 days of culture. The UltraVision™ Quanto Detection System Horseradish Peroxidase (HRP; ThermoScientific™, Thermo Fischer Scientific, CA, USA) followed by development with the chromogen substrate 3,3′-Diaminobenzidine (DAB, Amresco, Prodotti Gianni, Milan, Italy) was used to perform immunohistochemistry. Before adding the mouse monoclonal antibodies SIRT-1 and Col I (Santa Cruz Biotechnology, Texas, USA), the cells were permeabilized with Triton 0,1% for 10 minutes and then incubated with blocking solution for 5 minutes before adding the specific primary antibody at appropriate dilution, for 1 hour, at room temperature. Subsequently, the primary antibody enhancer was added for 10 minutes and lastly the HRP Polimer Quanto for 10 minutes. The chromogen substrate DAB was added to the cells, monitoring staining closely. After dehydration and mounting with DPX, cells were detected using light microscopy. Digitally fixed images were produced and analyzed using a dedicated image software (Image Pro-Premier, Immagini & Computer, Milan, Italy) and the Integrated Optical Density (IOD) was measured and normalized to cell number [30 (link)].
+ Open protocol
+ Expand
5

Western Blot Analysis of Osteogenic Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted from cells using cell lysis buffer (Boster) containing protease inhibitors (Boster, Wuhan, China). Total proteins were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis on 10% gels, and the separated proteins were transferred to polyvinylidene fluoride membranes (Millipore, NY, USA). After blocking with 3% BSA for 2 h, the membranes were incubated with primary antibodies against the following proteins: YAP (1 : 500, Boster, Wuhan, China), COL I (1 : 1000; Santa Cruz, USA), osteocalcin (OCN; 1 : 1000; Abcam, UK), RUNX-2 (1 : 1000; Abcam, UK), osteopontin (OPN; 1 : 1000; Boster), TG2 (1 : 1000; Santa Cruz, USA), HSP70 (1 : 500, Bioss, Beijing, China), and YAP (1 : 500, Boster, Wuhan, China). HRP-conjugated goat anti-rabbit IgG (1 : 5000; Boster) was applied as a secondary antibody and incubated with the membrane for 1 h at room temperature. Immunoreactive bands were detected using enhanced chemiluminescence reagents (Millipore, NY, USA). Signal intensity was measured using a Bio-Rad XRS chemiluminescence detection system (Bio-Rad, CA, USA). Actin or β-tubulin served as the loading control.
+ Open protocol
+ Expand
6

Icariin Enhances Osteoblast Proliferation

Check if the same lab product or an alternative is used in the 5 most similar protocols
The α-modified Eagle’s medium–high glucose (α-MEM) was purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). Cell Proliferation ELISA (BrdU) kit was purchased from Roche (Mannheim, Germany). ALP vitality assay kit was purchased from Nanjing Jiancheng Biotechnology Co., Ltd. (Jiangsu, China). BCA Protein Assay Kit was obtained from Pierce (Rockford, IL, USA). Mammalian Cell Lysis Kit and UNIQ-10 column Trizol total RNA extraction kit were bought from Sangon Biological Engineering Technology and Services Co., Ltd. (Shanghai, China). Improm-II Reverse Transcription System was purchased from Promega Corporation (Madison, WI, USA). FastStart Universal SYBR Green Master (ROX) kit was purchased from Roche (Mannheim, Germany). P-IκB-α, IκB-α, p65, P-p65 monoclonal antibodies and peroxidase-conjugated secondary antibody were purchased from Cell Singaling Technology (USA), and β-actin monoclonal antibody was purchased from Sigma-Aldrich Co. (USA). NF-κB inhibitor BAY 11-7082 was purchased from Beyotime Institute of Biotechnology (China). Col I, OCN, BMP-2 monoclonal antibodies and peroxidase-conjugated secondary antibody were purchased from Santa Cruz Biotechnology (CA, USA). Icariin was purchased from the Chinese National Institute for Control of Pharmaceutical and Biological Products (Beijing, China).
+ Open protocol
+ Expand
7

Assessing Cellular Responses to TGF-β

Check if the same lab product or an alternative is used in the 5 most similar protocols
DAL was purchased from BioBioPha Co., Ltd. SMAD3, p-SMAD3, SMAD7, α-SMA, fibronectin, Col I, E-cadherin, and TGF-β were purchased from Santa Cruz Biotechnology, Inc. Bovine serum albumin (BSA), DXR, sodium hydroxide, ferric nitrate, trichloroacetic acid (TCA), and perchloric acid (PCA) were obtained from Sigma-Aldrich.
+ Open protocol
+ Expand
8

Immunofluorescence analysis of epithelial-mesenchymal markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
The HPMCs were cultured on coverslips, and washed with PBS twice. Then the cells were fixed in 4% paraformaldehyde for 20 min, and then permeabilized with 0.1% Triton X-100. Next, 5% BSA was used to block the samples for 1.5 h at room temperature and then the following primary antibodies were used: anti-E-cadherin (1:100 dilution), anti-α-SMA (1:100) and COL-I (1:100) from Santa Cruz Biotechnology; anti-β-catenin (1:100) from Sigma. The antibodies were diluted in 5% BSA and cells were incubated with them overnight at 4°C, followed by incubation with FITC-labeled secondary antibody (Santa Cruz Biotechnology) at 22°C for 2 h. Nuclei was counterstained with 4,6-diamidino-2-phenylindole (DAPI). A UV fluorescence microscope (Leica, Shanghai, China; Magnification objective, ×40.) was used to visualize the immunostained cells and the intensity was analyzed with the image analysis software (Path, QC, Logene Biological Medical Engineering).
+ Open protocol
+ Expand
9

Probing TGF-β1 and PI3K/Akt Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were seeded in 6-well plates, followed by the administration of TGF-β1 or PI3K/Akt pathway activators and inhibitors with or without BYHWT for the indicated time. Cells was washed by Phosphate Buffered Saline (PBS, Hyclone), and then the whole cell proteins were extracted by the cell-lysis mixture including RIPA (Beyotime), PMSF (Beyotime) and protease inhibitors cocktail (Roche). The extracted proteins were quantified by BCA protein assay kit (Pierce, Thermo Scientific) and then loaded for 10% SDS-PAGE gel electrophoresis, transferred to PVDF membranes (Millipore), and blocked in 5% milk. Next, the membranes were incubated with the primary antibodies overnight at 4 °C and subsequently the HRP-conjugated secondary antibodies (CST, 7076; CST 7074) for 2 h at room temperature. Human β-actin (CST, 3700) was used as a loading control. Primary antibodies were used as follows: E-cadherin (CST, 3195), Vimentin (CST, 5741), Col-I (Santa Cruz, sc-293,182), PI3K (CST, 4257), phosphorylated PI3K (CST, 4228), AKT (CST, 4691) and phosphorylated AKT (CST, 4058). Membranes were washed and visualized using enhanced chemiluminescence kit (Pierce, Thermo) and Gel Imaging System (Syngene).
+ Open protocol
+ Expand
10

Comprehensive Protein Analysis of Cellular Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blot was performed as described previously.27 The cytoplasm protein and nuclear protein were extracted according to the instructions of the kit (Beyotime). The protein contents of extracts were determined using the Bradford method. Extracts were resolved using SDS‐PAGE and transferred to polyvinylidene difluoride filter membranes. Proteins were detected by immunoblotting and visualized using enhanced chemiluminescence. Antibodies (GAPDH, TGF‐β, Smad‐7, Smad‐2/3, p‐Smad‐2/3, Col‐I, Col‐III, α‐SMA, PPAR‐γ, NF‐κB, IκBα, p‐IκBα, TNF‐α, MCP‐1) were from Santa Cruz. The relative band densities were normalized against GAPDH.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!