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7 protocols using rabbit anti acetylated lysine

1

Western Blotting and Immunofluorescence Antibodies

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The following antibodies were used for Western blotting: anti-FLAG M2-peroxidase clone M2 (1:10 000; Sigma), mouse anti-FLAG M2 (1:5000; Sigma), mouse anti-HA.11 clone 16B12 (1:1000; Covance), mouse anti-myc clone 4A6 (1:1000; Merck Millipore), rabbit anti-acetylated-lysine (1:1000; Cell Signaling), mouse anti-p300 (1:1000; ab14984), rabbit anti-PCNA (1:1000; ab18197), mouse anti-α-tubulin clone B512 (1:5000; Sigma), rabbit anti-PAR (1:1000; Trevigen), rabbit anti-PARP1 (1:1000; Cell Signaling). The following antibodies were used for immunofluorescence: mouse anti-AIM-1 (1:600; BD), rabbit anti-PCNA (1:700; ab18197), mouse anti-GFP (1:500; Roche). Secondary HRP-conjugated antibodies for western blotting (Jackson ImmunoResearch) or IRDye fluorescent dye-conjugated antibodies (LI-COR) were used at 1:10000 dilution. Secondary Alexa Fluor® antibodies for immunofluorescence (Life Technologies) were used at 1:500 dilution.
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2

Investigating CUDC907-Induced Apoptosis Signaling

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HS01 cells were seeded at 250,000 cells/well in 6-well CellBIND (Corning) plates, grown to ~80% confluency, then treated with CUDC907 for indicated times. Cells were extracted with 4% sodium dodecyl sulfate (SDS), 0.01% bromophenol blue, 10% glycerol and 100 mmol/L dithiothreitol. Antibodies were used from Cell Signaling Technology: rabbit anti-cleaved caspase 7 (1:500; #8438); rabbit anti-cleaved caspase 3 (1:1000, #9664); rabbit anti-acetylated lysine (1:1000; #9814); mouse anti-actin (1:30,000; #3700); rabbit anti-pFAK(Y397) (1:1000; #8556), mouse anti-FAK (1:500; #3285); rabbit anti-pERK (1:1000; #4370); mouse anti-ERK (1:500; #9107); rabbit anti-pAKT (T308) (1:1000; #29655); mouse anti-AKT (1:1000; #29205); rabbit anti-pAKT (S473) (1:1000; #4060); rabbit anti-YAP (1:1000; #14074); rabbit anti-pYAP (S127) (1:1000; #4911). Primary antibodies were diluted in 1:1 tris-buffered saline-0.1% Tween and Odyssey Blocking Buffer or 5% milk and incubated overnight at 4°C. Secondary antibodies were diluted in same solution and incubated for 45 minutes at room temperature. Western blots were imaged on the LI-COR Odyssey Imaging System (LI-COR Biosciences) or ChemiDoc (Bio-Rad) and quantified on ImageJ (NIH).
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3

Western Blot and Immunofluorescence Antibody Protocol

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The following antibodies were used for western blotting: rabbit anti-SIRT2 (1:1000; Sigma #S8447 or Cell Signaling #12650), rabbit anti-ANKLE2 (1:500; Atlas Antibodies #HPA003602), goat anti-RTN4 (1:1000; Nogo N18, Santa Cruz Biotechnology #sc-11027), anti-FLAG M2-peroxidase clone M2 (1:10,000; Sigma #A8592), streptavidin–HRP (1:1000; GE Healthcare #RPN1231), mouse anti-HA.11 clone 16B12 (1:1000; Covance #MMS-101R), mouse anti-Myc clone 4A6 (1:1000; Merck Millipore #05-724), rabbit anti-acetylated-lysine (1:1000; Cell Signaling #9441), mouse anti-α-tubulin clone B512 (1:5000; Sigma #T5168), mouse anti-His (1:5000; GE Healthcare #27471001), mouse anti-GFP (1:1000; Roche #11814460001). The following antibodies were used for immunofluorescence: rabbit anti-SIRT2 (1:200; Sigma #S8447), mouse anti-Myc clone 4A6 (1:500; Merck Millipore #05-724), streptavidin–Alexa-Fluor-568 (1:500; Life Technologies #S11226), rabbit anti-calnexin (1:200; a gift from Erwin Ivessa; Medical University of Vienna, Austria), mouse anti-lamin A/C (1:100; Millipore #MAB3211), mouse anti-acetylated tubulin (1:1000; Sigma #T7451). Secondary HRP-conjugated antibodies for western blotting (Jackson ImmunoResearch) were used at 1:10,000 dilution. Secondary Alexa-Fluor®-conjugated antibodies for immunofluorescence (Life Technologies) were used at 1:500 dilution.
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4

Establishment of SIRT1 Inhibition Model

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BAI (Figure 1(a); 98% purity, CAS number 21967-41-9) was bought from Tauto Biotech (Shanghai, China). LPS from Escherichia coli O111:B4 and protease and phosphatase inhibitor tablets were purchased from Sigma-Aldrich (St. Louis, MO, USA). EX-527, also known as Selisistat, was purchased from Selleck (Houston, TX, USA). Rabbit anti-SIRT1, rabbit anti-HMGB1, rabbit antiacetylated lysine, and mouse anti-GFAP were from Cell Signaling Technology (Beverly, MA, USA); mouse anti-TNF-α and mouse anti-HMGB1 were from Santa Cruz Biotechnology (Santa Cruz, CA); rabbit anti-IL-1β, goat antimouse IgG H&L (Alexa Fluor® 594), and goat antirabbit IgG H&L (Alexa Fluor® 594/488) were from Abcam (Cambridge, MA, USA); rabbit anti-Iba-1 was from Wako (Rosemont, IL, USA); mouse anti-LaminB1, mouse anti-GAPDH, and mouse anti-β-actin were from Proteintech Group (Wuhan, China). Protein A/G-coupled magnetic beads were from Invitrogen (Carlsbad, CA, USA).
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5

Immunoblot Analysis of Protein Acetylation

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Whole-cell extracts were prepared and immunoblots performed on 30 µg of extract using standard procedures (Thoms et al., 2010 (link)). Primary antibodies were: rabbit anti-p65 (C-20) (Santa Cruz), mouse anti-p65 (Santa Cruz Biotechnology), rabbit anti-p65 (acetyl K310) (Abcam), mouse anti-His (generated in house), mouse anti-p300 (BD Pharmingen), rabbit anti-acetylated lysine (Cell Signaling), mouse anti-COMMD1 (Abnova), anti-XIAP (Santa Cruz) and anti-GST–HRP (Abcam) antibodies. Actin (Amersham) controlled for protein loading.
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6

Antibody Panel for Cellular Analysis

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The following antibodies were used in this study: rabbit anti-CTCF (active motif, 61,311), mouse anti-Flag (Sigma, F1804), rabbit anti-acetylated lysine (Cell Signaling Technology, 9441S), mouse anti-β-ACTIN (Abcam, ab8226), rabbit anti-HDAC6 (Proteintech, 12,834–1-AP), rabbit anti-CBP (Cell Signaling Technology, 7389S), mouse anti-MOF (Boster, A02757), rabbit anti-H3K27ac (Active Motif, 39,133), anti-OCT4 (Santa Cruz Biotechnology, sc-5279), anti-SOX2 (Abcam, ab79351), mouse anti-cTnT (Thermo, MA5-12,960), rabbit IgG (Santa Cruz Biotechnology, sc-2027), and anti-6 × HIS (Abcam, ab18184).
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7

Detecting NNMT and PGC-1α Acetylation

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NNMT was detected using a chicken anti-NNMT antibody from GenWay Biotech or the rabbit anti-NNMT antibody kindly provided by R. Weinshilboum34 (link). Goat anti-UCP1 (M-17) and rabbit anti-PGC1α (H-300) were from Santa Cruz Biotechnology. Rabbit anti-acetylated lysine was from Cell Signaling Technology. For detecting PGC-1α acetylation, PGC-1α was immunoprecipitated from liver or cultured-cell lysates with anti-PGC-1α. The precipitated protein was subjected to western blot analysis using anti-acetylated lysine.
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