The largest database of trusted experimental protocols

5 protocols using glun2a

1

Western Blotting Protocol for Quantifying Protein Levels

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sodium dodecyl sulfate–poly acrylamide gel electrophoresis (10%) was used for Western blotting as described previously [40 (link)]. Each gel contained 4 different μg loads (2, 4, 8 and 16 μg/well) of standards, obtained from homogenate prepared by combining caudal cortices from all young control animals. Protein samples from representatives of each different age/treatment group were loaded on each gel and analyzed in triplicate. Proteins were transferred to PVDF membranes, blocked in Odyssey blocking buffer (LiCor, Lincoln, NE): Tris-buffered saline (TBS) (1:1, v/v) and incubated at 4°C in one of the following primary antibodies (diluted in blocking buffer): GluN2B (Millipore, Billerica, MA; 1:1000 dilution), GluN2A (Santa Cruz, Santa Cruz, CA; 1:250), Fyn (Santa Cruz; 1:250), PSD-95 (ThermoScientific, Waltham, MA; 1:1000), Flotillin (Santa Cruz; 1:250) or GAPDH (Calbiochem, Millipore, 1:10000). Membranes were rinsed three times with TBS-T and incubated in fluorescence-based secondary antibody (Rockland Immunochemicals, Gibertsville, PA; 1:5000) diluted in blocking buffer. Bands were visualized by scanning in the LI-COR Odyssey imager.
+ Open protocol
+ Expand
2

Subcellular Fractionation of Pcdh10 Amygdala

Check if the same lab product or an alternative is used in the 5 most similar protocols
Adult Pcdh10+/− and wild-type male mice were rapidly decapitated and amygdala tissue was collected and flash frozen. 50 mg amygdala (5 animals were pooled into three samples of 50 mgs in each group, transgenic or wild types) were fractionated into various subcellular fractions using methods previously described (41 ,42 ). Protein extracts including PSD fractions were size fractionated in 7.5% Tris Glycine (Biorad, Hercules, CA) gels and western blotted with the following antibodies: PCDH10 (rat OL-protocadherin, clone 5G10, cat# MABT20, Millipore, Billerica, MA); β-actin (mouse, cat# A2228, Sigma, St. Louis, MO); PSD-95 (mouse, cat# 75-028, NeuroMab, Davis, CA); and GLUN1 (goat, cat# sc-1467) GLUN2A (goat, cat# sc-1468), and SRC (mouse, cat# sc-5266), all from Santa Cruz Biotechnology, Dallas, TX). The quantified band intensities were analyzed and plotted using the Graph Pad Prism software; paired two tailed Student’s t test was used for between group comparisons.
+ Open protocol
+ Expand
3

Immunohistochemical Profiling of Rat Brain

Check if the same lab product or an alternative is used in the 5 most similar protocols
Rats were deeply anesthetized with pentobarbital sodium (100 mg/kg, i.p.) and perfused transcardially with 4% paraformaldehyde in 0.1 M phosphate buffer at pH 7.4. The brain stem was removed, post-fixed, and transferred to 25% sucrose (w/v) for cryoprotection. Transverse sections (20 -µm) were cut with a cryostat. The free-floating sections were incubated with relevant antibodies with 1% normal goat sera and 0.3% Triton x-100 overnight at 4℃. After washes in PBS, the sections were incubated with relevant IgGs conjugated to Cy3 or Cy2 (1:500; Jackson ImmunoResearch, West Grove, PA) for 4 h at room temperature or overnight at 4℃. Double immunofluorescent staining was performed for PKCγ (abcam) with NeuN (Chemicon) or GluN2A (Santa Cruz). Following washes, the stained sections were mounted on gelatin-coated slides and coverslipped with Vectashield (Vector Laboratories). Slides were examined with a Nikon fluorescence microscope and images were captured with a CCD Spot camera. Control sections were processed with the same method except that the primary antisera are omitted.
+ Open protocol
+ Expand
4

Western Blot Analysis of Synaptic Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
After determination of the protein concentration, protein samples were separated by SDS-PAGE and subsequently transferred to PVDF membranes (Bio-Rad, Hercules, CA, USA). Membranes were blocked by 5% non-fat milk in TBST, then incubated at 4 °C overnight with the following primary antibodies: EphB2 (1:1000; R&D Systems, Minneapolis, MN, USA), GluN1 (1:1000; Invitrogen), GluN2A (1:800; Santa Cruz, Dallas, TX, USA), GluN2B (1:1000; Santa Cruz), P-GluN2B (Y1472) (1:1000; Millipore, Bedford, MA, USA), P-EphB2 (Y594) (1:1000; Abcam, Cambridge, MA, USA), β-actin (1:2000; Santa Cruz), GAPDH (1:1000) and His-tag (1:1000; Zhongshan Goldenbridge Biotechnology, Beijing, China). After rinses with TBST, membranes were incubated with horseradish peroxidase-conjugated secondary antibodies (1:1000; Beyotime Institute of Biotechnology, Haimen, China). Protein bands were visualized with an ECL detection system (Beyotime Institute of Biotechnology) and quantified densitometrically with ImageJ software (NIH).
+ Open protocol
+ Expand
5

Western Blot Analysis of Phospho-Akt

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting assay was performed as described previously15 (link)27 (link). For the detection of phospho-Akt, the samples prepared in the same day were used. The polyvinylidene difluoride membrane (Millipore, Bedford, MA, USA) was incubated with primary antibody against phospho-Akt (Ser473) (Cell Signaling Technology, Beverly, MA), Akt (Cell Signaling Technology, Beverly, MA), phospho-p38-MAPK (Cell Signaling Technology, Beverly, MA), p38-MAPK (Cell Signaling Technology, Beverly, MA), β-actin (Santa Cruz Biotech), GluN2A (Santa Cruz Biotech), or GluN2B (Santa Cruz Biotech). Primary antibodies were labeled with horseradish peroxidase-conjugated secondary antibody, and protein bands were imaged using SuperSignal West Femto Maximum Sensitivity Substrate (Pierce, Rockford, IL, USA). The EC3 Imaging System (UVP, LLC, Upland, CA) was used to obtained blot images directly from the polyvinylidene difluoride membrane. For the detection of total Akt, the same polyvinylidene difluoride membrane was stripped and then re-incubated with primary antibody against total Akt (Cell Signaling Technology). The quantification of Western blot data was performed using ImageJ software.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!