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10 protocols using geenius hiv 1 2 confirmatory assay

1

HIV, STI Testing in Kenyan Cohort

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HIV testing was carried out for all participants in accordance with the Kenyan Ministry of Health serial HIV testing algorithm with finger prick collection of whole blood for rapid testing using the Determine™ Assay (Abbott Laboratories, Matsudo, Japan), with a reactive result confirmed using First Response® (Premier Medical Corporation limited, Mumbai, India). Discordant HIV results were further tested using the fourth-generation Geenius™ HIV 1/2 Confirmatory Assay (Bio-Rad Laboratories, Johannesburg, South Africa). Upon enrollment in the RV393 cohort, urine samples were collected for Neisseria gonorrhoeae and Chlamydia trachomatis nucleic acid amplification testing using the Aptima Combo-2 (Hologic Corporation, San Diego, CA, USA). Serum samples were screened for syphilis using the Impact™ RPR carbon agglutination test kit (Alere Technologies, Jena, Germany). All testing was conducted according to package inserts.
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2

Evaluation of HIV Rapid Diagnostic Tests

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All eight HIV RDTs (Determine HIV-1/2 [Determine; Alere, USA], Uni-Gold HIV [Uni-Gold; Trinity Biotech, Ireland], Genie Fast HIV 1/2 [Genie Fast; BioRad Laboratories, USA], Vikia HIV 1/2 [Vikia; bioMérieux, France], HIV 1/2 Stat-Pak [Stat-Pak; Chembio, USA], Insti HIV-1/HIV-2 antibody test [Insti; bioLytical, Canada], SD Bioline HIV 1/2 3.0 [SD Bioline; Standard Diagnostics, South Korea], and First Response HIV Card Test1-2.O [First Response; PMC, India]) and two simple confirmatory assays (ImmunoComb II HIV 1&2 CombFirm [ImmunoComb Combfirm; Orgenics, Alere, Israel] and Geenius HIV 1/2 confirmatory assay [Geenius; Bio-Rad, USA]) were performed at ITM on all collected plasma samples from the six study sites, as reported elsewhere (14 (link)). All tests were performed by six trained laboratory technicians. Each test was read by two technicians, each of whom was blind to the results reported by the other reader and to the reference standard result. When the two readers gave discordant results, a third reader was consulted to resolve the discrepancy. The details of the tests, as well as their performance per origin of specimens in our evaluation, are presented elsewhere (14 (link)).
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3

HIV Testing Procedures in Study

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Information regarding prior HIV-testing was requested from all participants during the HIV-testing survey. Participants were asked to self-report their HIV status and to present documentation of their last HIV tests, such as the pregnancy card, child health card, HIV care card, or HIV counseling and testing card. Following national testing recommendations, participants that, at the time of the study visit, did not know their HIV status or had tested HIV-negative more than three months before the study visit, were offered testing according to the national HIV-testing algorithm, which includes two serial HIV rapid diagnostic tests from different manufacturers (Determine and Unigold) [13 –15 ]. For all HIV-positive participants, a dry blood spot (DBS) was collected on filter paper to perform a laboratory confirmation test (Bio-Rad Geenius HIV1/2 Confirmatory assay) [16 ]. The study HIV counselors provided pre- and post-test counseling, and all newly diagnosed women were referred to the nearest health unit for HIV care and treatment. The study counselors provided a referral guide and and recorded the data of the patient and of the nearest health unit or the one of preference in a study logbook, in order to facilite linkage to care.
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4

HIV Diagnosis and Monitoring Protocol

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Determine (Abbott Diagnostic Division, Hoofddorp, Holland) was used for pretreatment HIV diagnosis at the antenatal care clinics. Samples were transported to the laboratory for national health (LNSP) and analyzed for CD4 absolute count, CD4% and haemoglobin count using FACSPresto—Near Patient CD4 counter (Becton Dickinson, NYSE:BDX, USA). A confirmatory HIV-1 discriminatory test was performed using Geenius HIV 1/2 confirmatory assay (Bio-RAD). Plasma was separated from whole blood by centrifugation and stored at -20 C until transported on dry ice for further storing in -80 C and genotyping at the Clinical Virology section at Lund University, Sweden.
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5

STI Screening Protocol Using Validated Assays

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Blood samples were tested for HIV according to a validated HIV screening algorithm which includes two 4th generation HIV serology assays [VIDAS HIV Duo Quick (Biomerieux, France) and Genscreen Ultra HIV Ag-Ab (Bio-Rad, France)] and one confirmation assay Geenius HIV 1/2 Confirmatory Assay (Bio-Rad, France). Syphilis testing included TPA (Vitros 5600, Ortho Clinical Diagnostics, USA) and RPR (Macro-Vue, BD, USA) testing. Molecular Ct/Ng testing on urine and anorectal swabs was performed using the Abbott RealTime CT/NG assay (Abbott Molecular, Des Plaines, IL) according to the manufacturer's instructions. In case a sample was positive for Ng, an in-house confirmation molecular assay was performed (16 (link)).
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6

Immunodeficiency Markers in Guinea-Bissau

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All samples were collected during a 14-day time period on site in Guinea-Bissau and shipped to Sweden. Plasma was collected using EDTA vacutainer tubes (BD Biosciences) and whole blood using Cyto-Chex BCT tubes (Streck), in which cells are preserved while inadequate for functional analysis (44 (link)). HIV status was determined as previously described (45 (link)), and confirmed using the Geenius HIV-1/2 confirmatory assay (Bio-Rad). Absolute numbers of CD4 T-cells/µl and percentage of CD4 T-cells of lymphocytes (CD4%) were determined using the FACSPresto instrument (BD Biosciences). We used CD4% as an additional marker of immunodeficiency due to findings that CD4% is a more stable disease marker than absolute CD4 T-cell count in settings with elevated pathogenic burden and comorbidities (17 (link), 23 (link), 46 (link)), the close correlation to markers of T-cell exhaustion in HIV-1 infection (47 (link)), and on the previous use of this marker in the studied cohort (48 (link)).
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7

HIV Serodiagnosis Workflow

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Determine HIV Early Detect, Genscreen ULTRA HIV Ag-Ab (Bio-Rad Laboratories, Hercules, CA, USA), and Geenius HIV-1/2 Confirmatory Assay (Bio-Rad Laboratories) were used for serodiagnosis.
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8

Evaluation of HIV Confirmatory Assays

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The assays thus evaluated were NEW LAV BLOT I, NEW LAV BLOT II (LAV I and LAV II, Bio-Rad Laboratories, Hercules, CA, USA), and Geenius HIV 1/2 Confirmatory Assay (Geenius, Bio-Rad Laboratories). Each assay was performed according to the manufacturer’s instructions. The results of the LAV I assay were primarily interpreted according to the WHO criteria and also according to the CDC criteria [9 ], as necessary. In brief, two of three Env proteins were required for interpretation of HIV-1-positive in WHO criteria, and two of three proteins, Env gp160/120, Env gp41 and Gag p24, were required for interpretation of HIV-1-positive in CDC criteria. In LAV II test, when one or more Gag, Pol and Env bands were observed, the specimen was interpreted HIV-2-positive. Geenius was read using a Geenius Reader and visual reading according to the instructions in the package insert. In short, when one Env and one or more other HIV-1-specific line(s) were observed, the specimen was decided HIV-1-positive. When two HIV-2-specific lines were observed, the specimen was decided HIV-2-positive. Genscreen ULTRA HIV Ag-Ab (GS ULT, Bio-Rad Laboratories) was used to examine the anti-HIV-1 low titer performance panel and seroconversion panels.
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9

HIV Rapid Testing and Confirmation

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All participants underwent rapid test (antibody) for HIV-1/2 (bioLytical). A blood sample was collected on the same day for those with a positive rapid HIV test for additional testing using a qualitative enzyme immunoassay (Genscreen Ultra HIV Ag-Ab-Biorad) and confirmation by Geenius HIV 1/2 Confirmatory Assay (Biorad).
Confirmed HIV positive cases were reported to the national HIV/AIDS surveillance system of the National Public Health Organization. We defined as newly diagnosed cases those not previously reported to the surveillance system.
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10

HIV-1 Diagnostic Procedures in Mozambique

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HIV-1 diagnosis was performed on fresh venous whole blood samples following the Mozambican national algorithm for HIV testing, which consists of two sequential rapid immunochromatographic tests for detection of anti-HIV-1/2 antibodies. The screening was first performed using the Alere Determine™ HIV-1/2 (Abbott, USA) rapid test. Participants that the specimens did not react to the test were diagnosed as non-living with HIV-1. Reactive specimens were confirmed by a second rapid test (Uni-Gold® HIV, Trinity Biotech PLC, Ireland). Discordant results were resolved by a fourth-generation ELISA (Genscreen Ultra HIV Ag-Ab (BioRad, France) kit, using stored plasma or serum. The antibody reactivity pattern for HIV-1—Env (gp160 and gp41), Gag (p24) and Pol (p31) proteins was analyzed on stored serum samples from all individuals living with HIV-1, using the Geenius HIV 1/2 Confirmatory Assay (BioRad, France). CD4 T cells were enumerated from fresh EDTA-whole blood by four-color flow cytometry (FACS Calibur, Becton Dickinson [BD], USA). Plasma HIV-1 viral load was measured using the COBAS AmpliPrep/COBAS TaqMan HIV-1 Test, v2 (Roche, USA).
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