The largest database of trusted experimental protocols

4 protocols using purine

1

Lentiviral Knockdown of YPEL3 in gEECs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Recombinant lentiviral vectors encoding the YPEL3 short hairpin RNA (shYPEL3) and negative control shRNA (shN) (Table S2) were designed by BLOCK-iT™ RNAi designer online software. Virus packaging and cell transfection were performed as described previously [25 (link),26 (link)]. Specifically, recombinant lentiviral vectors were packaged and transduced into HEK 293T cells. After 48 h of continuous culture, the cell supernatant was collected, centrifuged at 2000 r/min for 10 min, then filtered and stored at −80 °C for later use. 3 mL of this virus stock solution collected above was added to 50% density gEECs, and 8μg/μL of polybrene (Sigma, 107689) was added at the same time. After 12 h, the mixture was replaced with normal culture medium, and after 48 h, purine (Sigma, P55805) was added to screen for 4–5 days to select a stable cell line.
+ Open protocol
+ Expand
2

Comprehensive Metabolite Identification Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
All reagents employed were of analytical or MS grade. Acetonitrile, methanol, isopropanol, and formic acid were purchased from Thermo Fisher Scientific (Madrid, Spain). Water employed to prepare the running buffer was purified through a Milli-Q system from Millipore (Millipore, Madrid, Spain). Arginine, glutamic acid, pyroglutamic acid, tyrosine, alanine, histidine, cystine, proline, aspartic acid, iminodiacetic acid, 5-hydroxy-L-tryptophan, and 5,6-dihydro-5-methyluracil were acquired in Sigma Aldrich (Madrid, Spain). Methionine sulfone and tyramine used as IS and sodium hydroxide were from Sigma Aldrich while purine and hexakis(2,2,3,3-tetrafluoropropoxy)phosphazine (HP-921) solutions used as a standard mass reference were acquired from Agilent Technologies (Waldbronn, Germany).
+ Open protocol
+ Expand
3

Biosynthesis and Purification of Cobamides

Check if the same lab product or an alternative is used in the 5 most similar protocols
Vitamin B12 (≥98%), dicyanocobinamide (Cbi, ≥93%), 5,6-dimethylbenzimidazole (DMB) (99%), 5-methylbenzimidazole (5-MeBza) (98%), 5-methoxybenzimidazole (5-OMeBza) (97%), benzimidazole (Bza) (98%), purine (98%) were purchased from Sigma-Aldrich. 15NH4Cl (99%) was obtained from Cambridge Isotope Laboratories. Yeast extract and peptone were purchased from Becton, Dickinson and Company. Bza-Cba, 5-MeBza-Cba and 5-OMeBza-Cba were prepared via guided cobamide biosynthesis 10 (link). Factor III (5-OHBza-Cba), norpseudo vitamin B12 and phenolic cobamides (i.e., Phenol-Cba and p-Cresol-Cba) were extracted and purified from Methanosarcina barkeri strain Fusaro (DSM 804), Sulfurospirillum multivorans (DSM 12446) and Sporomusa sp. strain KB-1 (16S rRNA gene GenBank accession no. AY780559.1) cells, respectively. Concentrations of purified cobamides were determined at 361 nm with a Lambda 35 UV-Vis spectrometer (PerkinElmer) using a molar extinction coefficient of 28,060 mole−1 cm−1 12 (link). Ethene (≥99.9%) and vinyl chloride (≥99.5%) were purchased from Sigma-Aldrich. All other chemicals used were reagent grade or higher.
+ Open protocol
+ Expand
4

Biosynthesis and Purification of Cobamides

Check if the same lab product or an alternative is used in the 5 most similar protocols
Vitamin B12 (≥98%), dicyanocobinamide (Cbi, ≥93%), 5,6-dimethylbenzimidazole (DMB) (99%), 5-methylbenzimidazole (5-MeBza) (98%), 5-methoxybenzimidazole (5-OMeBza) (97%), benzimidazole (Bza) (98%), purine (98%) were purchased from Sigma-Aldrich. 15NH4Cl (99%) was obtained from Cambridge Isotope Laboratories. Yeast extract and peptone were purchased from Becton, Dickinson and Company. Bza-Cba, 5-MeBza-Cba and 5-OMeBza-Cba were prepared via guided cobamide biosynthesis 10 (link). Factor III (5-OHBza-Cba), norpseudo vitamin B12 and phenolic cobamides (i.e., Phenol-Cba and p-Cresol-Cba) were extracted and purified from Methanosarcina barkeri strain Fusaro (DSM 804), Sulfurospirillum multivorans (DSM 12446) and Sporomusa sp. strain KB-1 (16S rRNA gene GenBank accession no. AY780559.1) cells, respectively. Concentrations of purified cobamides were determined at 361 nm with a Lambda 35 UV-Vis spectrometer (PerkinElmer) using a molar extinction coefficient of 28,060 mole−1 cm−1 12 (link). Ethene (≥99.9%) and vinyl chloride (≥99.5%) were purchased from Sigma-Aldrich. All other chemicals used were reagent grade or higher.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!