The largest database of trusted experimental protocols

30 protocols using selumetinib azd6244

1

Signaling Pathways in BRAF-Targeted Therapy

Check if the same lab product or an alternative is used in the 5 most similar protocols
BRAF inhibitor vemurafenib (PLX4032) and MEK inhibitor selumetinib (AZD6244) were purchased from Selleck Chemicals (Houston, TX, USA). PD-L1 antibody (ab205921) was obtained from Abcam (Cambridge, MA, USA). Antibodies against pMEK1/2 (9121), MEK1/2 (4694), pERK1/2 (4370), ERK1/2 (4695), AKT (9272), Bcl2 (2876), Bcl-XL (2764), cleaved caspase-3 (9661) and PARP (9542) were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies against pAKT (sc-7985), caspase-3 (sc-56053) and GAPDH (sc-47724) were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA).
+ Open protocol
+ Expand
2

Antibodies and Inhibitors for Cancer Research

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies against Furin (ab183495), N‐cadherin (ab98952), and Twist (ab175430) were purchased from Abcam Inc (Cambridge, MA, USA). Antibodies against pMEK1/2 (9121), MEK1/2 (4694), pERK1/2 (4370), ERK1/2 (4695), PARP (9542), β‐Actin (3700), E‐cadherin (3195), Nanog (4903), CD44 (3570) and CD133 (64326) were purchased from Cell Signaling Technology (Danvers, MA, USA). Zeb1 antibody (NBP1‐05987) was purchased from Novus Biologicals (Minneapolis, MN, USA). Caspase‐3 (sc‐56053) antibody was purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). Selumetinib (AZD6244) was purchased from Selleck chemicals (Houston, TX, USA) and Mirdametinib (PD0325901) was purchased from Cayman Chemicals (Ann Arbor, MI, USA). The zVAD‐fmk was purchased from Calbiochem (San Diego, CA, USA).
+ Open protocol
+ Expand
3

Small Molecule Inhibitor Screening

Check if the same lab product or an alternative is used in the 5 most similar protocols
CHIR99021 (S1263, Selleckchem, distributed by LuBioScience, Zurich, Switzerland) was used at different concentrations. LY2090314 (S7063, Selleckchem) was used at 100 nM. AZD1080 (S7145, Selleckchem) was used at 10 µM. Vemurafenib (PLX4032, RG7204), (S1267, Selleckchem) was used at 1 μM. Dabrafenib (S2807, Sellechchem) was used at 1 μM. Selumetinib (AZD6244), (S1008, Selleckchem) was used at 1 μM MG-132, (S2619, Selleckchem) was used at 20 μM.
+ Open protocol
+ Expand
4

Characterization of Pancreatic Cancer Cell Lines

Check if the same lab product or an alternative is used in the 5 most similar protocols
The origins of the human pancreatic cancer cell lines derived from primary and secondary sites used in this study are listed in Supplementary Table S1. Cells were maintained according to instructions from supplier or in RPMI-1640 medium with 10% (v/v) FBS and incubated at 37°C in a 5.0% CO2 atmosphere. In accordance with AACR practices identities of used cell lines were confirmed by SNP genotyping using Illumina MiSeq sequencing. Cells were tested for the presence of Mycoplasma using the MycoAlert Mycoplasma Detection Kit from Lonza. Antibodies, including used dilutions used for immunoblotting and immunofluorescence studies, are listed in Supplementary Table S1. Selumetinib (AZD6244; Cat.#S1008), rapamycin (AY-22989, Cat.#S1039), and MK-2206 2HCL (Cat.#S1078) were purchased from Selleck Chem, Inc.
+ Open protocol
+ Expand
5

Identifying Drug Sensitivity Modifiers

Check if the same lab product or an alternative is used in the 5 most similar protocols
A375-Cas9 cells were infected in four biological replicates. Small molecules were added to puromycin-selected cells 7 days post-infection. Cells either received a media change or were passaged every two or three days over the course of the screen in complete media supplemented with 1% penicillin/streptomycin. Vemurafenib (PLX-4032, Selleckchem, S1267) was screened at a final concentration of 2 μM. Selumetinib (AZD-6244, Selleckchem, S1008) was screened at a final concentration of 200 nM. 6-thioguanine (Sigma A4660) was screened at a final concentration of 2 μg/mL. Etoposide (Sigma E1383) was screened at a final concentration of 1 μg/mL. Surviving cells were harvested after 14 days of small molecule treatment. For analysis, the log2-fold-change of each sgRNA was determined relative to control cells treated with DMSO.
+ Open protocol
+ Expand
6

CRISPR Fitness Screening in Cancer

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cas9-containing cells were infected in two biological replicates with the Avana and GeCKO libraries in lentiGuide; unmodified, parental cells were infected in two biological replicates with the Avana library in lentiCRISPRv2. Small molecules were added to puromycin-selected cells 7 days post-infection. Cells either received a media change or were passaged every two or three days over the course of the screen in complete media supplemented with 1% penicillin/streptomycin. Vemurafenib (PLX-4032, Selleckchem, S1267) was screened at a final concentration of 2 μM. Selumetinib (AZD-6244, Selleckchem, S1008) was screened at a final concentration of 200 nM. Surviving cells were harvested after 14 days of small molecule treatment. For analysis, the log2-fold-change of each sgRNA was determined relative to the starting plasmid DNA (pDNA) pool for each biological replicate, which we have previously validated as representative of an early time point in pooled screens6 (link).
+ Open protocol
+ Expand
7

Kinase Inhibitors and Interferon-gamma Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following inhibitors were used: Crizotinib (PF-02341066) (Selleckchem S106), Ceritinib (LDK378) (Selleckchem S7083), Alectinib (CH5424802) (Selleckchem S2762), Lorlatinib (PF-6463922) (Selleckchem S7536), Selumetinib (AZD6244) (Selleckchem S1008), Trametinib (GSK1120212) (Selleckchem S2673), Tofacitinib Citrate (CP-690550) (Selleckchem S5001), AZD1480 (Selleckchem S2162), Rapamycin (Selleckchem S1039), LY294002 (Selleckchem S1105), JNK-IN-8 (Selleckchem S4901), Ro-31-8220 (Selleckchem 7207), AZD5363 (Selleckchem S8017), Ipatasertib (Selleckchem S2808), SCH772984 (Selleckchem S7101), Ulixertinib (Selleckchem S7854). BKM120 and Tepp-46 were kind gifts from Dr. Thomas Craig, NCI, Bethesda, Maryland, USA; recombinant human interferon-gamma, IFNγ (BioLegend 570208).
+ Open protocol
+ Expand
8

Characterization of AT/RT Cell Lines

Check if the same lab product or an alternative is used in the 5 most similar protocols
The AT/RT cell lines CHLA-02-ATRT, CHLA-04-ATRT, and CHLA-06-ATRT have been previously described [37 (link)]. CHLA-02-ATRT and CHLA-04-ATRT are available from ATCC (Manassas, VA). The BT37 AT/RT cell line was derived from a serially passaged xenograft derived from a patient with AT/RT. Cells were grown as semi-adherent cultures in RPMI/10% FBS media (500 mL RPMI, 50 mL fetal bovine serum, 1% L-glutamine, 1% Penicillin/Streptomycin, Life Technologies, Grand Island, NY). Cells were split at high density after scraping and gentle titration. BT12 cells (available through the Children's Oncology Group cell repository, Lubbock, TX) were grown in RPMI/10% FBS media (500 mL RPMI, 50 mL fetal bovine serum, 1% L-glutamine, 1% Penicillin/Streptomycin. Selumetinib (AZD6244) was obtained from Selleck Chemicals (Houston, TX) and dissolved in DMSO.
+ Open protocol
+ Expand
9

Cytotoxicity Evaluation of Breast Cancer Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The human breast cancer cell lines MDA-MB-231, MDA-MB-468, MCF-7, BT-474, BT-483, SKBR-3, ZR-75-1, Cells were incubated under sterile conditions at 37°C and were maintained in a humidified atmosphere 5% (vol/vol) CO2 with RPMI-1640 or DMEM medium containing 10% fetal bovine serum (GIBCO, Waltham, MA, USA). NVP-AUY922 (Luminespid) and selumetinib (AZD6244) were acquired from Selleck Chemicals (Houston, TX, USA), dissolved in DMSO to a final concentration of 10 mM, and stored at −20 °C.
MTT assay was performed to evaluate the cellular proliferation inhibitory activities of CY-9d by a panel of breast cancer cells. In general, cells were seeded into 96-well plates and treated with a series of concentration of test drugs for 24h. The MTT reagent (5mg/ml) was added per well for 3h at 37°C. After that, the MTT was removed and 150 μl DMSO was added to dissolve the formazan crystals. Then, optical density (OD) was measured at 570 nm of the solution. The control group consisted of untreated cells. The percentage of cell viability averaged from three individual experiments.
+ Open protocol
+ Expand
10

Characterization of Pancreatic Cancer Cell Lines

Check if the same lab product or an alternative is used in the 5 most similar protocols
The origins of the human pancreatic cancer cell lines derived from primary and secondary sites used in this study are listed in Suppl. Table 1. Cells were maintained according to instructions from supplier or in RPMI 1640 medium with 10% (v/v) FBS and incubated at 37°C in a 5.0% CO2 atmosphere. In accordance with AACR practices identities of used cell lines were confirmed by SNP genotyping using Illumina MiSeq sequencing. Cells were tested for the presence of mycoplasma using the MycoAlert Mycoplasma Detection Kit from Lonza, (Basel, Switzerland). Antibodies including used dilutions used for immunoblotting and immunofluorescence studies are listed in Suppl. Table 1. Selumetinib (AZD6244; Cat.#S1008), Rapamycin (AY-22989, Cat.#S1039), MK-2206 2HCL (Cat.#S1078) were purchased from Selleck Chem, Inc. (Houston, TX).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!