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Primescript double strand cdna synthesis kit

Manufactured by Takara Bio
Sourced in Japan, China

The PrimeScript Double Strand cDNA Synthesis Kit is a laboratory tool designed for the synthesis of double-stranded complementary DNA (cDNA) from RNA samples. The kit includes the necessary enzymes, buffers, and reagents to reverse transcribe RNA into first-strand cDNA and subsequently synthesize the second strand, resulting in a double-stranded cDNA product.

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39 protocols using primescript double strand cdna synthesis kit

1

Quantitative Analysis of CrBUD23 and CrTrm112 Expression

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Total RNA was extracted using RNAiso Plus for Total RNA kit and DNA synthesis performed using PrimeScript™ Double-Strand cDNA Synthesis Kit (Takara). To quantitatively detect changes of CrBUD23 and CrTrm112 expression in both wild-type and transgenic strains, qRT-PCR was performed with Bio-Rad CFX Connect Optics Module or ABI QuantStudio 6 Flex, and the primers used are listed in Supplementary Table S5. The standard protocol was applied to CrBUD23 and CrTrm112 expression detection using KOD SYBR qPCR Mix (TOYOBO). PCR conditions were as follows: one step of 95°C for 30 s, followed by 40 cycles of 95°C for 5 s and 60°C for 30 s. The actin (Cre13.g603700) gene was used as the reference gene in qRT-PCR detection of CrBUD23 and CrTrm112. Data were analyzed using the 2−ΔΔCT program. Three technical replicates and three biological replicates were done.
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2

Diatom Total RNA Extraction and cDNA Synthesis

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Total RNA was isolated from a diatom colony using the TRIzol Plus RNA Purification Kit (Invitrogen) according to the manufacturer’s protocol. The RNA fraction was treated with DNase I (Takara, Otsu, Japan). Double-stranded cDNA was synthesized from 2 μg of total RNA with random primers (9-mers) using a PrimeScript Double Strand cDNA Synthesis Kit (Takara). The resultant cDNA was quantified using a Qubit dsDNA HS Kit.
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3

Quantitative Gene Expression Analysis

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Total RNA was extracted using the RNAiso reagent (TaKaRa, Shiga, Japan), and reverse transcribed into cDNA with a PrimeScript Double Strand cDNA Synthesis Kit (TaKaRa), following the manufacturer’s instructions. Gene expression levels were quantified by quantitative real-time PCR (qRT-PCR) using SYBR Premix ExTaq II (TaKaRa) with a Thermal Cycler Dice Real-Time System TP800 (TaKaRa). Transcript abundances were calculated according to the comparative CT method [19 (link)]. For each sample, at least three biological replicates were analyzed, and each with three repeats. ACT2 was used as a reference for normalizing gene expression. All primers used in this study are listed in Supplemental Table S2.
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4

Quantitative Analysis of miRNA and mRNA

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Total RNA was extracted from tissues and cells using RNAiso reagents (Takara Bio, Inc.) according to the manufacturer's protocol. Total RNA was quantified using a NanoDrop2000 spectrophotometer (Thermo Fisher Scientific, Inc.). Subsequently, RNA (2 µg) was reverse transcribed into cDNA using the One Step PrimeScript miRNA cDNA synthesis kit (Takara Bio, Inc.) at 37°C for 20 min and 80°C for 2 min or the PrimeScript™ Double Strand cDNA Synthesis kit (Takara Bio, Inc.) at 65°C for 5 min and 42°C for 1 h. Next, qPCR was performed using ChamQ Universal SYBR qPCR Master Mix (Vazyme BioTech Co., Ltd.) with thermocycling conditions as follows: Initial denaturation at 95°C for 30 sec, 40 cycles at 95°C for 5 sec and 60°C for 20 sec. The sequences of the primers used for qPCR are presented in Table III. miRNA and mRNA expression levels were quantified using the 2−ΔΔCq method (29 (link)) and normalized to the internal reference genes U6 and GAPDH, respectively.
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5

Transient overexpression and silencing of NbFKPPIase

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N. benthamiana leaves after being infiltrated with agrobacteria containing the NbFKPPIase transient overexpression or silencing construct were collected for RNA extraction. A total amount of 1.5 µg RNA per sample was used for transcriptome analysis. Double‐stranded cDNA was synthesized using the PrimeScript Double‐Strand cDNA Synthesis Kit (Takara) following the manufacturer's recommendations. DNA was cleaned up with KAPA Pure Beads (KAPABiosystem; Roche) followed by end repair and A‐tailing reaction with the KAPA HyperPrep Kit (KAPABiosystems). DNA was cleaned up for adaptor ligation and subjected to sequencing with a Direct cDNA Sequencing Kit (Oxford Nanopore Technology). A total amount of 100 pmol of cDNA was loaded on Nanopore R9.4 flow cells and sequenced using the MinION platform (Oxford Nanopore Technology).
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6

Cloning and Sequencing of PK-LOX Genes

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Double strand cDNA was synthesized using a PrimeScript Double Strand cDNA Synthesis Kit (Takara, Shiga, Japan). PK-LOX1 was amplified by PCR using KOD plus neo (TOYOBO, Osaka, Japan) and gene specific primers (PK-LOX1: 5′-GGAATCAAATCATAATGGCGCCA-3′ and 5′-AGCTTGTTTTATACACTGATGGCA-3′, PK-LOX2: 5′-TTGGTAACGCTGGCTCAGTC-3′ and 5′-ACTGACTAAATACTTATTGCATTTGGA-3′). The PCR products were cloned into pUC19 vector using a TOPO blunt cloning kit. The PK-LOX1 and PK-LOX2 cDNA sequences were confirmed by Sanger sequencing.
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7

Sequencing and Genome Characterization of Rotavirus Strains

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Viral RNA was extracted from working stocks of 16-06, 16-27, 18-12, and MpR12 using a High Pure Viral Nucleic Acid kit, reverse-transcribed into double-stranded cDNA using a PrimeScript Double Strand cDNA Synthesis kit (TaKaRa Bio), and then subjected to sequence library construction using a Nextera XT DNA Library Preparation kit (Illumina, San Diego, CA). The 300-bp paired-end sequencing was performed on an Illumina MiSeq sequencer (Illumina). Sequence reads were trimmed and assembled into contigs by de novo assembly using CLC Genomics Workbench 21 (Qiagen, Hilden, Germany). The obtained contigs were analyzed by the BLASTn program (National Center for Biotechnology Information, Bethesda, MD). The 5′- and 3′-terminal sequences of each genome segment were determined using a SMARTer RACE 5′/3′ kit (TaKaRa Bio) with the segment-specific primers listed in Table S3. The GCs of isolated strains were assigned based on whole-genome sequences in the Rotavirus A Genotype Determination tool in ViPR (https://www.viprbrc.org/brc/home.spg?decorator=vipr) provided by the RCWG (38 (link)).
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8

Quantitative RT-PCR of Alzheimer's Markers

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Total RNA was extracted from brain tissue by using TRIzol (Invitrogen) according to the manufacturer’s protocol. RNA was reverse transcribed by using a PrimeScript Double Strand cDNA Synthesis kit (Takara Bio Inc.), and first-strand products were used as PCR templates. Quantitative RT-PCR was performed by using a QuantiNava SYBR Green PCR kit and performed by using the iQ5 multicolor RT-PCR detection system (Bio-Rad Laboratories). The thermal cycling profile was as follows: 55°C for 30 min, 95°C for 15 min, and then 40 cycles of 95°C for 30 s, and 55°C for 30 s. The primer sequences used were as follows: BACE1 forward, 5′-TACTACTGCCCGTGTCCACC-3′; BACE1 reverse, 5′-ACAACCTGAGGGGAAAGTCC-3′; PS1 forward, 5′-CTCATGGCCCTGGTATTTATCAA-3′; PS1 reverse, 5′-GAGCCATGC GGTCCATTC-3′; ADAM10 forward, 5′-GTTGCCGCCTCCTAAACCA-3′; ADAM10 reverse, 5′-GGCGGTCTCCTCCTCTTTAAAG-3′; β-actin forward, 5′-AATGTGTCCGTCGTGGA TCT-3′; and β-actin reverse, 5′-GGTCCTCAGTGTAGCCCAAG-3′.
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9

Isolation and Sequencing of T. roseum RNA

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Total RNA was isolated from the cultures of T. roseum using Trizol reagent (Invitrogen) according to the manufacturer’s instruction. Two micrograms of RNA was reverse transcribed and used for cDNA synthesis using the PrimeScript™ Double Strand cDNA Synthesis Kit (Takara) as described by the manufacture. The PCR products were cloned into pMD19-T Simple vector for DNA sequencing.
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10

Viral Nucleic Acid Extraction and Sequencing

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Viral nucleic acids were extracted from the pooled faecal suspensions as described previously32 (link), and double-stranded cDNA was synthesized with the PrimeScript Double Strand cDNA Synthesis kit (Takara BIO, Shiga, Japan). Sequencing libraries were prepared with Nextera XT DNA Sample Preparation kit (Illumina, San Diego, CA) and sequenced on the Illumina MiSeq platform (Illumina). The obtained reads were compared against NCBI NT/NR database as described previously33 (link). The sequence reads related to smacoviruses were de novo assembled to contigs using CLC Genomics Workbench software (CLC bio, Aarhus, Denmark).
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