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Astra 7

Manufactured by Wyatt Technology
Sourced in United States, Canada

The ASTRA 7 software is a comprehensive data analysis and modeling tool designed for use with Wyatt Technology's light scattering instruments. It provides advanced capabilities for the characterization of macromolecules, nanoparticles, and other dispersed systems.

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101 protocols using astra 7

1

Stoichiometry of AGL55-K2hPg Complex

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An Agilent 1260 II HPLC system (Agilent Technologies), which consists of a variable wavelength detector, a quaternary pump, an online vacuum degasser, and an autosampler, was used in tandem with a multiangle light scattering (MALS) detector (DAWN‐HELEOS; Wyatt Technology), and a differential refractive index detector (Optilab® T‐Rex; Wyatt Technology). The mobile phase was 50 mM Na‐phosphate/100 mM NaCl, pH 7.4 (PBS). Prior to injection, the protein samples were passed through a membrane filter (pore size 0.1 μm; Supelco Analytical). The sample volume injected into the channel was 100 μl, and the flow rate was set at 0.5 ml/min. Data acquisition and evaluation were accomplished using Astra 7 software (Wyatt Technology Corporation).
The stoichiometry of binding between the AGL55 and K2hPg in the two‐component complex was determined using the Protein Conjugate Analysis Method in Astra 7 software (Wyatt Technology). This method, based on the unique specific refractive index increments (dη/dc) and extinction coefficients of each protein enables accurate determination of the components of the complex along molecular mass distributions.
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2

SEC-MALS Analysis of Biomolecular Samples

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SEC-MALS experiments were performed using a Superdex Increase 200 10/300 GL column (GE Healthcare) on an Agilent 1260 HPLC Infinity II in PBS buffer at RT (~297 K). Protein elution was monitored by three detectors in series namely, an Agilent multi-wavelength absorbance detector (absorbance at 280 nm and 254 nm), a Wyatt miniDAWN TREOS multiangle light scattering (MALS) detector, and a Wyatt Optilab rEX differential refractive index (dRI) detector. The column was pre-equilibrated overnight in the running buffer to obtain stable baseline signals from the detectors before data collection. Molar mass, elution concentration, and mass distributions of the samples were calculated using the ASTRA 7.1.3 software (Wyatt Technology). A BSA solution (2–4 mg/ml), purchased from Sigma-Aldrich and directly used without further purification, was used to calibrate inter-detector delay volumes, band broadening corrections, and light-scattering detector normalization using standard protocols within ASTRA 7.1.3.
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3

Molecular Characterization of WJP-F80 by HPSEC

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High-performance size-exclusion chromatography system (HPSEC) was applied for the molecular parameter analysis of WJP-F80 according to our previous methods [24 (link)]. Sample was dissolved in NaNO3 solution (0.1 M) and filtered for injection. An OHpak SB-803 HQ column and an OHpak SB-805 HQ column (8 mm × 300 mm, Shodex, Tokyo, Japan) in series were used for separation, and 0.1 M NaNO3 solution containing 0.02 wt% NaN3 was applied as eluent with a flow rate of 0.6 mL/min. Three detectors, a multi-angle laser light scattering detector (DAWN HELEOS-II, MALLS), a differential pressure viscometer (ViscoStar III, DP), and a refractive index detector (Optilab T-Rex, RI) (Wyatt Technology, Santa Barbara, CA, USA) in series were equipped with the HPLC system. For the data collection and analysis, ASTRA 7.1.3 software (Wyatt Technology, Santa Barbara, CA, USA) was applied, and a DN/DC value of polysaccharide sample was adopted as 0.145 for the calculation of molecular parameters [25 (link)].
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4

Size-Exclusion Chromatography for Molecular Mass

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Measurements were performed using an Ettan LC high-performance liquid chromatography system with a UV-900 detector (Amersham Pharmacia Biotech; λ = 280 nM), coupled with a miniDawn Treos MALS detector (Wyatt Technology; λ = 658 nm) and an Optilab T-rEX dRI detector (Wyatt Technology; λ = 660 nm). Separation was performed using a Superdex 75 Increase 10/300 GL column (GE Healthcare), using a flow rate of 0.4 mL min−1 and a mobile phase consisting of 10 mM Na-HEPES pH 7.8, 150 mM NaCl. The data processing and weight-averaged molecular mass calculation were performed using the ASTRA 7.1.3 software (Wyatt Technology).
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5

Molecular Weight Analysis of Polysaccharides

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The molecular weight of PPP, HMP and LMP was analysed by high-performance size-exclusion chromatography (HPSEC, Shimadzu, Tokyo, Japan), which consisted of an Optilab rEX differential refractometer (RI, Wyatt Technology, Santa Barbara, CA, USA) and a DAWN HELEOS II multi-angle light scattering detector (MALLS, Wyatt Technology). Briefly, isocratic elution with 0.15 mol/L NaCl containing 0.02% NaN3 at a flow rate of 0.5 mL/min was performed on the Shodex SB-804 HQ column and the Shodex SB-806 HQ column. A dn/dc value of 0.138 mL/g was used for the molecular weight analysis. The samples were dissolved in the mobile phase at a concentration of 2 mg/mL. After filtering through 0.22 μm membrane, 25 μL solution was injected through a sample loop. Weight average molecular weight (Mw) was analysed using ASTRA 7.1.2.5 software (Wyatt Technology).
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6

Purification and Characterization of proMbxA

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For SEC, proMbxA or MbxA containing IMAC fractions were pooled, concentrated to 0.5 ml and after centrifugation at 21,700 g for 20 min directly applied to a Superose 6 Increase 10/300 GL column (GE Healthcare) in SEC buffer (50 mM TRIS pH 7.8, 100 mM NaCl, 10 mM CaCl2). The chromatography was performed on an ÄKTA Purifier system (GE Healthcare).
proMbxA peaks resulting from the SEC were pooled separately and stored with 20% glycerol at − 80 °C. A subsequent SEC-MALS analysis was carried out to investigate the oligomeric state of the proMbxA species. The separated species were concentrated to 1.3–2.5 mg/ml and 200 µl of each were applied to a Superose 6 Increase 10/300 GL column (GE Healthcare) equilibrated with SEC buffer and connected to a miniDAWN TREOS II triple-angle light scattering detector (Wyatt Technologies) and an Optilab T-rEX differential refractive index detector (Wyatt Technologies). The set up was performed using an Agilent 1260 HPLC system with a flowrate of 0.6 ml/min and the data was analyzed with the ASTRA 7.1.2.5 software (Wyatt Technologies).
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7

Protein Molecular Mass Determination

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The average molecular mass of M300 and M150 in solution of was determined by Multi-Angle Light Scattering (MALS) measurements using fast protein liquid chromatography (FPLC) tandemly arranged with a Wyatt TREOS II 3 angle light scattering instrument coupled to a Wyatt Optilab rEX online refractive index detector. Protein samples (500 μl) were loaded to a Superose 12 10/300 analytical gel filtration column (GE Healthcare, Chicago, IL) and ran at 0.5 ml/min in a buffer of 10 mM Tris-HCl pH 7.7, 150 mM NaCl, and 1 mM TCEP buffer before passing through the light scattering and refractive index detectors in a standard SEC-MALS format at 25°C. Protein concentration was determined from the excess differential refractive index. The concentration and the observed scattered intensity at each point in the chromatograms were used to calculate the absolute molecular mass from the intercept of the Debye plot using Zimm’s model as implemented in Wyatt’s ASTRA 7.1 software.
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8

Sulfated Alginate Characterization

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The sulfur content was measured by high-resolution inductively coupled plasma mass spectroscopy at the NTNU Department of Chemistry, Trondheim, Norway, and the degree of sulfation was calculated as per a previously described method (24). Molecular weight averages and dispersity were determined with size exclusion chromatography with multi-angle laser light scattering (SEC-MALLS). Samples were solved to 1 mg/ml in 0.15 M Na2NO3 and 0.01 M EDTA at pH 6. SEC-MALLS was performed using a TSK G-6000 PW column (Tosoh Bioscience LLC, PA, United States), an LS detector, WTC Dawn Heleos (Wyatt Technology, CA, United States) and an RI detector, Sdodex RI-501 (Showa Denko, Tokyo, Japan). Chromatograms were analyzed in Astra 7.1 (Wyatt Technology, CA, United States). Refractive index increment (dn/dc) was set to 0.15 and 0.13 for alginate and sulfated alginate, respectively, as previously described (Arlov et al., 2017 (link)).
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9

Size-Exclusion Chromatography of Proteins

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Analytical SEC was performed using an Agilent 1260 Infinity II HPLC System equipped with a Superdex 200 Increase 5/150 GL column coupled to a multi-angle light scattering system (DAWN HELEOS-II, Optilab T-rEX, and Eclipse DualTec - Wyatt Technologies). For all experiments, 10 µL of protein at a concentration of 1 mg/mL in PBS was injected onto the column. Chromatograms were processed using Astra 7.3 (Wyatt Technologies).
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10

Size-Exclusion Chromatography of AAGAB Complexes

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AAGAB protein, mutants, or the binary AAGAB:AP2α complex was injected into a Superdex 200 Increase 10/300 size-exclusion column equilibrated in a buffer containing 25 mM HEPES pH 7.5 and 150 mM NaCl. The column was coupled to a multi-angle light scattering detector (DAWN HELEOS II, Wyatt Technology) and a refractometer (Optilab T-rEX, Wyatt Technology). Data were collected every 0.5 s at a flow rate of 0.5 mL/min at room temperature. Data processing was carried out using the program ASTRA 7.3 (Wyatt Technology). Molar mass and mass distribution of each protein or protein complex were calculated and reported by ASTRA 7.3.
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