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10 protocols using nf κb

1

Analyzing Apoptosis Signaling Pathways

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The lower lobe of the left lung was homogenized in lysis buffer, and the proteins were collected. For the detection of Nrf2 and NF-κB, the cytoplasmic component and nuclear component were isolated by treating a nuclear protein extraction kit (Beyotime Biotechnology, Shanghai, China) and centrifuged at 12,000 g for 10 min at 4°C. After the protein concentration was measured by a BCA kit, 50-μg protein samples were separated by SDS-PAGE and transferred onto a PVDF membrane. The membrane was blocked in 5% non-fat dry milk, followed by incubation with pro-caspase-3 (1:8,000, Abcam, United States), cleaved-caspase-3 (1:500, Abcam, United States), pro-caspase-9 (1:800, Abcam, United States), cleaved-caspase-9 (1:1,000, Abcam, United States), Nrf2 (1:5,000, Abcam, United States), and NF-κB (1:3,000, Abcam, United States) primary antibodies overnight at 4°C. After being washed and incubated with secondary antibody (1:5,000, Zhongshan Golden Bridge Biotechnology, Beijing, China) at room temperature for 1 h, the proteins were visualized with the enhanced chemiluminescence reagent (GE Healthcare Bio-Sciences, Pittsburgh, PA, United States), analyzed using ImageJ version 1.61 software (National Institutes of Health, Bethesda, MD, United States) and normalized to β-actin and Lamin B.
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2

Sweroside Modulates Inflammatory Response

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Sweroside (purity > 98%, Figure 2A) was obtained from National Institutes for Food and Drug Control (Beijing, China). Fetal bovine serum (FBS) and phosphate buffer saline (PBS) were acquired from Servicebio Company (Wuhan, China). DMEM, DMSO, trypsin, the RIPA Lysis buffer and the PVDF membrane were obtained from Solarbio Company (Beijing, China). The annexin V-FITC apoptosis detection kit was obtained from Vazyme Biotech Company (Nanjing, China). Hoechst 33342, NAM, SIRT1, NF-κB, β-actin and the proliferating cell nuclear antigen (PCNA) antibodies were from Beyotime Institute of Biotechnology (Shanghai, China). The TNF-α, IL-1β, IL-6, IL-10, MnSOD, FOXO1, COX-2 and i-NOS antibodies were obtained from Proteintech Company (Wuhan, China). The ROS assay kit, CCK-8 assay kit, NO assay kit, cell cycle and apoptosis analysis kits were from Beyotime Institute of Biotechnology (Shanghai, China). The PGE2 Elisa Kit was purchased from Hui Jia Company (Xiamen, China). The other chemicals were of analytical grade and were commercially available.
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3

Co-Immunoprecipitation of ZHX2 Protein

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Cell lysate was prepared using RIPA (Beyotime) or Pierce IP lysis buffer (Thermo fisher scientific) containing protease inhibitor cocktail. Protein quantification was performed by BCA assay (Beyotime). Membrane was blocked in 5% skin‐milk for 1 hour and then incubated with primary antibody overnight at 4C. Horseradish peroxidase‐conjugated secondary antibody (Beyotime) was then added for 1 hour at room temperature. Briefly, protein supernatant for Co‐IP was incubated with Protein A/G PLUS‐Agarose (Santa Cruz Biotechnology) beads for 3 hour at 4°C. The supernatant was transferred to a new tube, added anti‐ZHX2 or anti‐IgG antibodies, and incubated for 1 hour at 4°C. The mixture was incubated with beads under rotary agitation overnight at 4°C, then centrifuged and discarded the supernatant. Beads were collected and washed for three times. The 2 × loading‐buffer was added to beads and the mixture was heated at 100℃ for 10 minutes. Protein‐antibody complexes were determined by immunoblot. The following primary antibodies were used: ZHX2(GeneTex), NF‐κB (CST), Tubulin (Beyotime), and IgG (ABclonal).
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4

Western Blot Analysis of Cellular Proteins

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RIPA buffer (Beyotime, China) was used to lyse cells to obtain total protein, and the protein concentration was determined by BCA method. The same amount of samples were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and the protein was transferred to the PVDF membrane (Millipore, Burlington, United States). After blocking with 5% skim milk powder (Beyotime, China) for 2 h at room temperature, the membrane and antibody were incubated overnight at 4°C. The primary antibodies were as follows: AMPK, NF-κB, p-NF-κB, MMP9, MMP2, TIMP-2, E-cadherin, Vimentin and β-actin (Beyotime, China). Then incubated with HRP-labeled Goat Anti-Rabbit IgG (H + L) (Beyotime, China) at room temperature for 2 h. Protein bands were detected by enhanced chemiluminescence (Tanon chemiluminescent gel imaging system, Tanon-5200Multi, China).
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5

Notch2-Mediated Transcriptional Regulation

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The Notch2 (wt or mt, 4 µg) or the pLVX vector (4 µg) was co-transfected with the pRL-TK vector (50 ng, Promega) and luciferase reporter plasmid, such as 12× RBP-Jκ (2 µg, a gift from U. Lendahl, Sweden), Hes1 (2 µg) or NF-κB (2 µg, Beyotime), into 2×106 lymphoma cells by electro-transfection (Nucleofector II, Amaxa Biosystems) using the Amaxa Cell Line Nucleofector Kit V (Lonza). After 12–24 h, a Dual-Luciferase Reporter Assay System (Promega) was used to detect luciferase activities. Each experiment was performed independently for three times at least.
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6

Bioactive Components of Castanopsis lamontii

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The buds of Castanopsis lamontii were collected in the Dehong Area, Mang City, Yunnan Province, China (24°17′12″ N, 98°23′6″ E) and identified by Botanist Keke Chen, Kunming Institute of Botany, Chinese Academy of Sciences. The hydroxyl free radical assay kit and superoxide anion assay kit were obtained from Nanjing Jiancheng Bioengineering Institute. The LDH cytotoxicity assay kit, NO assay kit, primary antibodies (p-NF-κB (p65) (Product #AN371), NF-κB (Product #AF0246), GAPDH (Product #AF0006), and secondary antibodies (Product #A0216 & A0208) were purchased from Beyotime Institute of Biotechnology, Co. Ltd. (Haimen, China) Primary antibodies (TLR4 (Product #14358S), COX-2 (Product #12282), iNOS (13120S) were purchased from Cell Signaling Technology, Co. Ltd. (Danvers, MA, USA). The MTT cell proliferation and cytotoxicity assay kit was purchased from Nanjing KeyGEN Bio-TECH, Co. Ltd. (Nanjing, China) The PGE2 ELISA kit and the TNF-α ELISA kit were purchased from Jiangsu Meimian industrial Co., Ltd. (Zhangjiagang, China) Chemical standards used in HPLC analysis, UPLC-Q-TOF/MS analysis and cell assays were purchased from Sigma-Aldrich Co., Ltd. (St. Louis, MO, USA).
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7

Immunofluorescence Analysis of NF-κB

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Cells were washed with PBS and fixed with 4% paraformaldehyde for 15 min at room temperature. Subsequently, cells were blocked with 5% bovine serum albumin (Beyotime Institute of Biotechnology) and 0.1% Tris-X100 in TBST for 1 h at 37°C and incubated with NF-κB (cat. no. sc-71675; 1:100; Santa Cruz Biotechnology, Inc.) overnight at 4°C. Cells were washed with PBS and incubated with goat anti-rabbit IgG-CFL 555 (cat. no. sc-362272; 1:5,000; Santa Cruz Biotechnology, Inc.) for 1 h at 37°C. Cells were washed with PBS and stained with DAPI assay for 15 min in darkness at room temperature. Cells were observed and images were captured using fluorescence X71 inverted microscope (Olympus Corporation).
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8

Investigating Cytoprotective Mechanisms

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Cell culture media and additives were from HyClone Company (Beijing, China). p-ERK, p-P38, p-JNK, NF-κB, Bcl-2, and Bax antibodies were purchased from Beyotime Biotechnology (Shanghai, China). Caspases-3 antibody was from Cell Signaling Technology. HO-1 antibody was purchased from Bioworld Technology (Minnesota Minneapolis, US). Actin and gp91 antibodies were from Signalway Technology (St. Louis, MO). Phosphorylated IkBα and IkBα antibodies were purchased from Santa Cruz (Shanghai, China). DCFH-DA, JC-1, Hoechst, PI, PDTC, PD98059, SB203580, U0126, and SP60012 were purchased from Beyotime Biotechnology (Shanghai, China). Apocynin (APO), NSC23766 (NSC), and other reagents were purchased from Sigma-Aldrich (Shanghai, China).
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9

Investigating Anti-inflammatory Effects

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Carrageenan was acquired from Sigma-Aldrich (Shanghai, China). PI, FBS, and PBS were acquired from Servicebio (Wuhan, China). ALT, AST, ALP, TBIL, and DBIL kits were obtained from Biobase (Jinan, China). NF-κB, P-NF-κB, β-actin, and IκB antibodies were obtained from the Beyotime Institute of Biotechnology (Shanghai, China). RIP1, RIP3, and IKKα antibodies were obtained from Proteintech (Wuhan, China). 3-MA and Nec-1 were acquired from MedChem Express (Shanghai, China). LDH cytotoxicity assay kit and Z-VAD-FMK were obtained from the Beyotime Institute of Biotechnology (Shanghai, China). DPH was acquired from Aladdin (Shanghai, China). DMEM, DMSO, MTT, FDA, and PVDF membranes were obtained from Solarbio (Beijing, China). Other chemicals were of analytical grade and commercially available.
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10

Placental Protein Profiling by Western Blot

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The placenta sample was weighed and crushed in a mortar. Protein sample was collected. Total protein extraction from the placenta was performed according to kit instructions. Coomassie R-250 was used to stain protein gels (Bradford assay). Proteins were resolved by SDS-PAGE and transferred to nitrocellulose membranes. Thereafter, the primary antibodies including AChE (diluted at 1:400; Beyotime Biotechnology), α7nAChR (diluted at 1:400; Beyotime Biotechnology), NF-κB (diluted at 1:400; Beyotime Biotechnology) and β-actin (diluted at 1:1,000, Abcam) were dissolved in TBST and used to incubate membranes at 4°C overnight. After a cleaning in TBST, membranes were incubated with the appropriate HRP-conjugated secondary antibody (diluted at 1:2000; Beyotime Biotechnology) for 2 hours at room temperature. The membrane was air dried and photographed using a gel imaging system. The results were analyzed using Quality One software. The relative expression of the target band was calculated based on the optical density ratio of target band to β-actin.
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