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13 protocols using pre mir control

1

miR-16 Overexpression and Knockdown in Colorectal Cancer Cells

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Overexpression of miR-16 was achieved by transfecting cells with pre-miR-16 (a synthetic RNA oligonucleotide mimicking the miR-16 precursor). Knockdown was achieved by transfecting a miRNA inhibitor (a chemically modified single-stranded antisense oligonucleotide designed to specifically sequester the mature miRNA). Synthetic pre-miR-16, anti-miR-16 and scrambled negative control RNA (pre-miR-control and anti-miR-control) were purchased from GenePharma (Shanghai, China). SW480, HT-29 and Caco2 cells were seeded in 6-well plates. On the following day, the cells were transfected using Lipofectamine 2000 (Invitrogen) when the cells were approximately 70% confluent. In each well, 100 pmol of pre-miR-16, pre-miR-control, anti-miR-control and anti-miR-16 were used. After 4–6 h, the media were changed to RPMI-1640 or RPMI-DMEM medium supplemented with 2% FBS. The cells were harvested at 24 or 48 h after transfection for the isolation of total RNA or protein, respectively.
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2

Modulating miR-31 in Lung Cancer Cells

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miR-31 overexpression was achieved by transfecting lung cancer cells with a miRNA mimic (a synthetic RNA oligonucleotide duplex mimicking the miRNA precursor). Knockdown was achieved by transfecting a miRNA inhibitor (a chemically modified single-stranded antisense oligonucleotide designed to specifically sequester the mature miRNA). Synthetic pre-miR-31, anti-miR-31 and the scrambled negative control RNA (pre-miR-control and anti-miR-control) were purchased from GenePharma (Shanghai, China). A549, H1975 and HCC827 cells were seeded into 6-well plates or 60 mm dishes using RPMI 1640 media supplemented with 10% FBS. The cells were transfected with Lipofectamine 2000 (Invitrogen) using Opti-MEM Reduced Serum Medium(Gibco, Carlsbad, CA, USA) on the following day when the cells were approximately 60-70% confluent. Equal amounts of pre-miR-31 or pre-miR-control were used in each well. For the miRNA knockdown, equal amounts of anti-miR-31 or anti-miR-control were used. After 6 hours, the media was changed to RPMI 1640 supplemented with 2% FBS. The cells were harvested 24 h after the transfection and subjected to analysis by quantitative RT-PCR or Western blotting.
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3

miRNA Overexpression in Colorectal Cancer Cells

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miRNA overexpression was achieved by transfecting cells with a miRNA mimic, a synthetic RNA oligonucleotide duplex mimicking the miRNA precursor. Synthetic RNA molecules, including pre-miR-143, pre-miR-145 and a scrambled negative control RNA (pre-miR-control), were purchased from GenePharma (Shanghai, China). Caco2, HT29 and SW480 cells were seeded in 6-well plates and transfected using Lipofectamine 2000 (Invitrogen) on the following day when the cells were approximately 70% confluent. For the miRNA overexpression experiments, 100 pmol of pre-miR-143, 100 pmol of pre-miR-145 or 50 pmol of both pre-miR-143 and pre-miR-145 were used. At 6 h after transfection, the medium for the Caco2 cells was changed to DMEM supplemented with 2% fetal bovine serum, and the medium for the HT29 and SW480 cells was changed to RPMI-1640 supplemented with 2% fetal bovine serum. The cells were harvested at 24 h or 48 h post-transfection for the isolation of total RNA or protein, respectively.
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4

miRNA Overexpression Using Synthetic Mimics

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miRNA mimic (a synthetic RNA oligonucleotide duplex mimicking miRNA precursor) was used for the overexpression of miRNA. The synthetic RNA molecules were purchased from GenePharma (Shanghai, China) including pre-miR-200c and pre-miR-control (scrambled negative control RNA). MDA-MB-231 and 4T1 cells seeded in 6-well plates were transfected with Lipofectamine 2000 (Invitrogen) when the cells were nearly 70% confluent. Then 100 pmol of pre-miR-200c was added. 6 h later, changed the culture medium to DMEM supplemented with 2% fetal bovine serum (FBS). 24 h or 48 h after the transfection, harvested the cells for the isolation of total RNA or protein.
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5

miRNA Modulation in MCF-7 Cells

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miRNA overexpression was achieved by transfecting cells with a miRNA mimic (a synthetic RNA oligonucleotide duplex mimicking miRNA precursor), whereas knockdown was achieved by transfecting cells with a miRNA inhibitor (a chemically modified single-stranded antisense oligonucleotide designed to specifically target mature miRNA). Synthetic RNA molecules, including pre-miR-143, pre-miR-145, anti-miR-143, anti-miR-145 and scrambled negative control RNA (pre-miR-control and anti-miR-control), were purchased from GenePharma (Shanghai, China). MCF-7 cells were seeded in 6-well plates and transfected with Lipofectamine 2000 (Invitrogen) on the following day when the cells were approximately 70% confluent. For overexpression of miRNAs, 100 pmol of pre-miR-143, 100 pmol of pre-miR-145 or 50 pmol of both pre-miR-143 and pre-miR-145 were used. For knockdown of miRNAs, 100 pmol of anti-miR-143, 100 pmol of anti-miR-145 or 50 pmol of both anti-miR-143 and anti-miR-145 were used. After 6 h, the medium was changed to DMEM that was supplemented with 2% fetal bovine serum. The cells were harvested 24 h or 48 h after the transfection for the isolation of total RNA or protein, respectively.
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6

miRNA Overexpression in Colorectal Cancer Cells

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miRNA overexpression was achieved by transfecting cells with a miRNA mimic, which is a synthetic RNA oligonucleotide duplex mimicking the miRNA precursor sequence. Synthetic RNA molecules, including pre-miR-135b and a scrambled negative control RNA (pre-miR-control), were purchased from GenePharma (Shanghai, China). HT-29 and SW-480 cells were seeded on 6-well plates and were transfected using Lipofectamine 2000 (Invitrogen) on the following day, when the cells were approximately 70% confluent. For the miRNA overexpression experiments, 100 pmol of pre-miR-135b were used. After 6 h, the medium of the HT-29 and SW-480 cells was changed to RPMI-1640 medium supplemented with 2% fetal bovine serum. The cells were harvested at 24 h or 48 h post-transfection for the isolation of total RNA or protein, respectively.
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7

miR-23a/b Overexpression and Knockdown

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Overexpression of miR-23a/b was achieved by transfecting gastric cancer cells with miRNA mimics (synthetic RNA oligonucleotides mimicking precursors of miR-23a/b). Knockdown of miR-23a/b was achieved by transfecting with miRNA inhibitors (chemically modified single-stranded antisense oligonucleotides designed to specifically sequester mature miR-23a/b). Synthetic miR-23a/b mimics (pre-miR-23a/b), inhibitors (anti-miR-23a/b) and scrambled negative control RNAs (pre-miR-control and anti-miR-control) were purchased from GenePharma (Shanghai, China). MKN-45 and AGS cells were seeded in 6-well plates using RPMI 1640 medium supplemented with 10% FBS. The cells were transfected with Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA) using Opti-MEM Reduced Serum Medium (Gibco, Carlsbad, CA, USA) on the following day when the cells were ~60–70% confluent. For each well, equal amounts of pre-miR-23a/b, pre-miR-control, anti-miR-23a/b or anti-miR-control were used. After 6 h, the medium was changed to RPMI 1640 supplemented with 2% FBS. The cells were collected at 24 or 48 h after transfection and subjected to analysis by quantitative RT-PCR or western blotting.
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8

Modulating miR-221 Expression in Breast Cancer

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miRNA overexpression was achieved by transfecting cells with miRNA mimics, whereas knockdown was achieved by transfecting cells with a miRNA inhibitor according to previous publications42 (link). miRNA overexpression was achieved by transfecting cells with miRNA mimics (a synthetic RNA oligonucleotide duplex mimicking miRNA precursor), whereas knockdown was achieved by transfecting cells with a miRNA inhibitor (a chemically modified single-stranded antisense oligonucleotide designed to specifically absorb target miRNA). Synthetic RNA molecules, including pre-miR-221, anti-miR-221 and scrambled negative control RNA (pre-miR-control and anti-miR-control), were purchased from GenePharma (Shanghai, China). MCF-7 or MDA-MB-231 cells were seeded in 6-well plates and transfected with Lipofectamine 2000 (Invitrogen) on the following day when the cells were approximately 70% confluent. Cells were transfected with 50 pmol pre-miR-221 or anti-miR-221 to overexpress or knockdown cellular miR-221. After 6 h, the medium was changed to DMEM or L-15 medium that was supplemented with 2% fetal bovine serum. The cells were harvested 24 or 48 h posttransfection for RNA and protein analysis.
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9

miR-30a Overexpression and Silencing Assay

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Synthetic RNA molecules, including pre-miR-30a, anti-miR-30a and scrambled negative control RNAs (pre-miR-control and anti-miR-control) were purchased from GenePharma (Shanghai, China). The cells were seeded onto 6-well plates and transfected using Lipofectamine 2000 (Invitrogen) on the following day when the cells were approximately 70% confluent. In each well, equal 100 pmol of pre-miR-30a, anti-miR-30a or scrambled negative control RNA were used. The cells were harvested at 24 h after transfection for quantitative RT-PCR analysis and Western blotting.
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10

Modulating miR-10a Expression in Lymphoma Cells

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miRNA overexpression was achieved by transfecting cells with a pre-miR-10a (a synthetic RNA oligonucleotide duplex mimicking the miRNA precursor), whereas knockdown was achieved by transfecting cells with an anti-miR-10a (a chemically modified single-stranded antisense oligonucleotide designed to specifically target mature miRNA). Synthetic pre-miR-10a, anti-miR-10a, pre-miR-control and anti-miR-control RNAs were purchased from Genepharma (Shanghai, China). Next, 3 × 106 OCI-LY7 or OCI-LY3 cells were seeded per well in 6-well plates and were transfected with Lipofectamine 2000 (Invitrogen) following the manufacturer’s protocols. The cells were harvested 24 h or 48 h after transfection for quantitative RT-PCR or Western blotting. The transfection efficiency was determined by quantitative RT-PCR for hsa-miR-10a. Transfection experiments were repeated three times independently and in each case were done in triplicate.
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