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8 protocols using aβ1 40

1

Amyloid-beta Aggregation Characterization

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Aβ1-40 was purchased from Peptide Institute (Osaka, Japan) and was prepared as a stock solution at a concentration of 66.7 pmol/ul in sterilized PBS (0.54 mg Aβ1-40 peptide was dissolved in 1.9 ml sterilized PBS), and aliquots were stoked at – 20 °C. Aβ1-40 solution was aggregated by incubation at 37 °C for 2 days before use. The conversion degree of Aβ1-40 solution after incubation was confirmed by transmission electron microscopy (TEM) as described previously [38 (link)]. The Aβ1-40 solution was placed on a copper collodion carbon-coated grid (carbon deposition with vapor deposition equipment (JEE-420: JEM Led)). After 5~10 min adsorption at room temperature, samples were counterstained with 1% uranyl acetate (MERCK Ltd., Germany) and then examined under a JEM 1230 (JEOL Ltd., Japan) at 80 kV. Images (4 k × 2.7 k:11 million pixels) were captured with a side-entry Orius 1000 TEM CCD camera (model no 785, Gatan Led, USA).
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2

Amyloid-β Peptide Preparation and Characterization

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Synthetic Aβ1–40 and Aβ1–42 peptides (Peptide Institute, Inc., Osaka, Japan) were obtained as lyophilized powders. The peptides were reconstituted in 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP) to a concentration of 0.5 mM. The peptide solution was evaporated to form a film and stored at −80 °C.
To prepare oligomeric Aβ, the Aβ1–42 peptide film was dissolved in dimethyl sulfoxide (DMSO) to a concentration of 5 mM. After sonication for 90 s, Aβ1–42 peptides were diluted to 100 μM in Ham’s F12 medium (IFP Co., Yamagata, Japan) and incubated at 22 °C. At each time point, aliquots were collected and mixed with 25 μM ThT (Sigma-Aldrich, St. Louis, MO, USA) solution. The ThT fluorescence intensities were monitored with excitation at 450 nm and emission at 486 nm. To prepare monomeric Aβ, the Aβ1–40 peptide film was dissolved in DMSO to a concentration of 1 mM and diluted in Ham’s F12 medium immediately before use.
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3

Amyloid-beta Aggregation Study

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Aβ(1–40) (code 4307-v, trifluoroacetic salt, lyophilized from dimethyl sulfoxide solution) was purchased from Peptide Institute Inc. (Osaka, Japan). Human serum albumin (HSA) (code 70024–90-7, A8763) was purchased from Sigma. Matrigel (Phenol Red free, code 356237) was purchased from Becton-Dickinson and Co. (NJ, USA). NHS-activated Sepharose 4 Fast Flow (code 17–0906-01) was purchased from GE Healthcare UK Ltd. Recombinant human apolipoprotein E3 (apoE3) (code 010–20261) and apoE4 (code 017–20271) were purchased from Wako (Osaka, Japan). Human CLU was purified from human serum as described previously [29 (link)].
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4

Amyloid-β Interaction Evaluation in Neuroblastoma

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1–42 and Aβ1–40 were purchased from Peptide Institute Inc. (Osaka, Japan), and SH-SY5Y cells (human neuroblastoma; EC94030304) were obtained from the European Collection of Authenticated Cell Cultures (London, UK). Dulbecco’s Modified Eagle Medium (DMEM) Ham’s/F-12 medium and all-trans retinoic acid (ATRA) were obtained from Fuji Film Wako Pure Chemical Co., Ltd. (Osaka, Japan). Penicillin G sodium, streptomycin sulfate, amphotericin B, and fetal bovine serum (FBS) were purchased from Thermo Fisher Scientific K.K. (Waltham, MA, USA). 17β-estradiol and G-15 were procured from Cayman Chemical Company (Ann Arbor, MI, USA), and raloxifene hydrochloride was obtained from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan). The other chemicals used in this experiment were commercially available and of the purest grade. Their structures are shown below (Figure 1). Special-grade products were used for other reagents.
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5

Amyloid-β Aggregation Assay

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A solid form of Aβ(1–40) was purchased from the Peptide Institute (Osaka, Japan). Aggregation was carried out by gently dissolving the peptide (0.50 mg/mL) in phosphate-buffered saline (PBS) (pH 7.4). The solution was incubated at 37 °C for 42 h with gentle and constant shaking. A mixture containing 50 μL Aβ(1–40) aggregates (final conc., 1.25 μg/mL), 50 μL 99mTc-Ham complex (final conc., 8.3 kBq/mL), 50 μL PIB (final conc., 64 pM–125 μM in 30% EtOH), and 850 μL of 30% EtOH was incubated at room temperature for 3 h. The mixture was filtered through Whatman GF/B filters (Whatman, Kent, U.K.) using a Brandel M-24 cell harvester (Brandel, Maryland, USA), and the radioactivity of the filters containing the bound 99mTc-Ham complex was measured using a γ counter (Wallac 1470 Wizard; PerkinElmer, Massachusetts, USA). Values for the half-maximal inhibitory concentration (IC50) were determined from displacement curves using GraphPad Prism 5.0 (GraphPad Software, Inc., California, USA).
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6

Isolation and Characterization of Plasma Proteins

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Human CRP and SAP were isolated by the team of Professor Mark B. Pepys (Wolfson Drug Discovery Unit, Centre for Amyloidosis and Acute Phase Proteins, Division of Medicine, University College London) as described elsewhere53 (link)54 (link)55 (link). CRP and SAP were obtained with full informed consent from each individual donor. All individuals were paid donors in the USA, where the plasma was collected at centers approved by the UK Department of Health. Donor selection, donor examination and plasma collection were performed according to standards and/or requirements set by the UK Department of Health, in accordance with the European Pharmacopoeia monograph ‘Human Plasma for Fractionation’. No additional or specific ethical committee approvals were sought as these are not required for experimental in vitro use of plasma proteins isolated from donor plasma obtained with informed consent and processed under the prevailing strict regulatory guidelines specified here. AGP and GST were obtained from Sigma. MDH and LDH were obtained from Roche. Aβ(1-40) was purchased from Peptide Institute, Inc. (Osaka, Japan).
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7

Examining Aβ Effects on ARPE-19 Cells

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ARPE-19 cells (ATCC® CRL-2302™), a human RPE cell line [10 (link)], were obtained from American Type Culture Collection (Manassas, VA, USA). The cells were maintained in Dulbecco’s modified Eagles medium (Gibco®, Life Technologies, Carlsbad, CA) and F12 medium (Gibco®) 1:1 supplemented with 10% (v/v) fetal bovine serum (FBS), 100 units/ml penicillin G, and 100 μg/mL streptomycin (Wako Pure Chemical Industries, Ltd., Osaka, Japan). To examine the effects of Aβ on the ARPE-19 cells, several concentrations of Aβ 1–40 (Peptide Institute, Inc., Osaka, Japan) were added to the culture medium. Equivalent amount of DMSO (Wako Pure Chemical Industries), a solvent for Aβ1–40, was added to the culture medium in the control group.
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8

Synthetic Amyloid-Beta Peptide Quantification

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Synthetic human Aβ1-38, Aβ1-40, Aβ1-42, and Aβ1-43 were purchased from the Peptide Institute (Osaka, Japan). Uniformly stable isotope-labeled peptides manufactured by rPeptide (Watkinsville, GA, USA), corresponding to each peptide (Aβ1-38, Aβ1-40, Aβ1-42, and Aβ1-43), were used as internal standards (ISs). Artificial CSF was purchased from Tocris Bioscience (Bristol, UK), and rat plasma was purchased from Charles River Laboratories Japan (Yokohama, Japan). Other materials and reagents were purchased from Kanto Chemical (Tokyo, Japan), Kokusan Chemical (Tokyo, Japan), and Sigma-Aldrich (St. Louis, MO, USA). Ultrapure water was prepared using Milli-Q Integral 10 (Merck, Darmstadt, Germany).
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