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5 ethynyl 2 deoxyuridine edu assay kit

Manufactured by RiboBio
Sourced in China, Japan

The 5-ethynyl-2′-deoxyuridine (EdU) assay kit is a laboratory tool used for the detection and quantification of DNA synthesis in cells. The kit utilizes the incorporation of EdU, a modified nucleoside, into newly synthesized DNA during the S-phase of the cell cycle. This allows for the visualization and analysis of cell proliferation through various imaging and flow cytometry techniques.

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29 protocols using 5 ethynyl 2 deoxyuridine edu assay kit

1

EdU Assay for Cell Proliferation

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5-Ethynyl-2′-deoxyuridine (EdU) assay kit (RiboBio, China, C10310–3) was used to measure cell proliferation. Briefly, before the addition of EdU (50 μM), cells were seeded into 24-well plates (2 × 104 cells/well) and cultured with DMEM for 24 h. The cells were then immersed in formaldehyde (4%) for 30 min and soaked in 0.5% Triton X-100 for 10 min. 400 μL 1× ApolloR reaction cocktail was then supplemented. After a 30 min reaction, to bring out the nuclei, Hoechest 33,342 (400 μL) was added. 30 min later, images of the cells were shot by a Nikon microscope (Nikon, Japan). To assess cell proliferation, we then randomly selected three fields and calculated the mean number of cells.
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2

Wnt3a Signaling Pathway Regulation

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Wnt3a, BMS345541, DAPI, and MTT were from Sigma‐Aldrich (Indianapolis, IN, USA). Fetal calf serum and RPMI‐1640 medium were purchased from Gibco (Grand Island, NY, USA). Lipofectamine RNAi MAX, Lipofectamine 2000, stealth‐siRNA, goat anti‐mouse and anti‐rabbit secondary antibodies conjugated to HRP, and donkey anti‐rabbit antibody–Alexa Fluor 647 were purchased from Invitrogen (Carlsbad, CA, USA). Monoclonal antibodies against cyclin A, cyclin B1, cyclin D1, cyclin E, p21, β‐actin, and polyclonal antibody against RXRα were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Polyclonal antibodies against β‐catenin and phosphorylated β‐catenin were purchased from Cell Signaling Technology (Danvers, MA, USA). The PVDF membranes were obtained from Millipore (Billerica, MA, USA) and the 5‐ethynyl‐2′‐deoxyuridine (EdU) assay kit was from RiboBio (Guangzhou, China). The Dual‐Glo Luciferase Assay System kit was purchased from Promega (Madison, WI, USA) and the EliVision Plus kit was from Maixin Bio (Fuzhou, China).
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3

Quantifying Cell Proliferation Using EdU Assay

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We used a 5-ethynyl-2′-deoxyuridine (EdU) assay kit (RiboBio, Guangzhou, China) to perform EdU assays. We seeded 1 × 104 cells into 96-well plates for overnight incubation. On the second day, we added 100 μl of EdU solution (50 μM) into the cells and incubated it for 2 h. Then, the cells were fixed with 4% paraformaldehyde for 30 min. Then, we added 100 μl of Apollo Reaction Solution to the wells and incubated it for 30 min; this was followed by incubation with 100 μl of Hoechst 33342 in the dark for 30 min. Finally, the cells were photographed with an EVOS M5000 Inverted Fluorescence Microscope (Thermo Fisher Scientific, USA).
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4

EdU Assay for DNA Synthesis and Proliferation

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Our lab analyzed DNA synthesis and cell proliferation by applying a 5-ethynyl−2′-deoxyuridine (EdU) assay kit (RiboBio, Guangzhou, China). Then, our team seeded 1 × 104 SW1990 and PANC−1 cells into 95-well plates overnight. On the second day, 25 μM EdU solution was put on the plate, and the cells were incubated for 24 h. Afterward, 4% formalin was utilized to fix cells at room temperature for 2 h before 0.5% Triton X−100 to permeabilize cells for 10 min. Further, 200 μL of Apollo reaction solution and 200 μL of DAPI were added to stain EdU and nuclei, respectively, for 0.5 h. The technician measured DNA synthesis and cell proliferation using a Nikon microscope (Nikon, Tokyo, Japan).
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5

EdU Assay for S-Phase Detection

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We used an 5-ethynyl-2′-deoxyuridine (EdU) assay kit (Ribobio, Guangzhou, China) to detect S-phase cells. Detailed steps were consistent with our previously published report (Li et al., 2015). EdU-labeled cells, which were red, were viewed under the EVOS FL Auto.
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6

Quantifying Tumor Cell Proliferation using EdU Assay

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Tumor cell proliferative capacity was evaluated using the 5-ethynyl-2-deoxyuridine (EdU) assay kit (RiboBio). Twenty-four hours after transfection, the cells were inoculated into 96-well plates at a density of 8 × 103 cells per well, and after subsequent 24 h incubation, the cell samples were incubated with 50 µM EdU at 37°C for 2 h and subsequently fixed with 4% paraformaldehyde for 30 min. The fixed cells were rinsed with 2 mg/mL glycine for 5 min, and phosphate-buffered saline (PBS) with 0.5% Triton X-100 was subsequently applied for 10 min. The cells were stained with 1× Apollo staining solution for 30 min. After rinsing with PBS (0.5% Triton X-100) for 10 min, the cells were incubated in 100 mL of 1× Hoechst 33,342 for 30 min. Subsequently, the cells were fixed in 4% paraformaldehyde and stained with DAPI. Finally, cell counting was performed using fluorescence microscopy to quantify the percentage of EdU-positive cells [32 (link)].
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7

Cell Growth Evaluation Using EdU Assay

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The 5‐Ethynyl‐2’‐deoxyuridine (EdU) assay kit (RiboBio, Guangzhou, China) was employed to evaluate cell growth ability. The transfected cells, cultured in a well of a 96‐well plate at a density of 5000 cells per well, were labeled with 50 μm of EdU and incubated for additional 2 h before being fixed with 4% paraformaldehyde (pH = 7.4) for 30 min. Then, 0.5% Triton X‐100 was added to each well and incubated at room temperature for 10 min. After that, anti‐EdU working solution (ApolloR reaction cocktail) and Hoechst 33342 were successively employed to stain the cells. The EdU‐labeled root cells were observed under a fluorescence microscope (Nikon, Tokyo, Japan).
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8

Quantifying Cell Proliferation via CCK-8 and EdU Assays

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Approximately 1.0 × 104 transfected SCC-4 and CAL-27 cells were cultured in 96-well plates, and then underwent 1-h incubation with CCK-8 reagent (Beyotime, Shanghai, China). The absorbance at 450 nm was recorded using an Infinite M200 multimode microplate reader (Tecan, Shanghai, China).
After approximately 48-h transfection, the 5-ethynyl-2’-deoxyuridine (EdU) assay kit provided by Ribo (Guangzhou, China) was utilized to examine the proliferation of SCC-4 and CAL-27 cells. Specifically, cells were grown in culture medium containing EdU (Invitrogen) solution (1:1,000). At the proliferative stage, the cells were labeled with EdU for 2 h, followed by rinsing with PBS (0.5 g/ml) thrice. Subsequently, the cells were stained by 4′,6-diamidino-2-phenylindole (DAPI) from Invitrogen for 10 min at indoor temperature in the dark and underwent PBS rinsing more than twice. Ultimately, assessment of the stained cells was implemented via the FACSCalibur DxP flow cytometer (BD Biosciences, Shanghai, China).
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9

Comprehensive Cell Viability Analysis

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For viability assays, cells were plated at 1 × 104 cells/well in triplicate. Assays were performed using CellTiter-Glo Luminescent Cell Viability Assay Kit (Promega) or Cell Counting Kit-8 (CCK-8) (Dojindo). Cell proliferation was also measured using the 5-ethynyl-2'-deoxyuridine (EdU) assay kit (RiboBio) according to the manufacturer's instructions. For the cell cycle analysis, the cells were fixed and then stained with PI staining buffer (Multisciences Biotech) for 30 min at room temperature in the dark, and measured using flow cytometry. Soft agar colony formation assays were performed as previously described. Briefly, the 5 × 104 cells in 0.4% Noble agar were plated on top of the 0.8% Noble agar bottom layer in a 6-well plate. After 3 weeks, they were stained with 1 mg/ml p-iodonitrotetrazolium chloride for visualization and counting. In addition, mouse serum was collected and measured using an ELISA kit (Immunodiagnostic Systems) according to the manufacturer's instructions.
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10

Quantifying Cell Proliferation with EDU

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The 5-ethynyl-2′-deoxyuridine (EDU) assay kit (Guangzhou RiboBio, Guangzhou, China) was used to monitor cell proliferation. The cells were inoculated into 96-well plates (1 × 104/well) until 80% confluence. Each well was added with 100 μl of EDU solution and incubated for 2 h. The cells were incubated with 4% paraformaldehyde at room temperature for 30 min. Then, the cells were treated with 100 μl of 1× Apollo® staining reaction solution for 30 min. Next, 100 μl of Hoechst 33342 reaction solution was added to each well and incubated for 30 min. A microscope (DSZ2000X, Beijing Cnmicro Instrument Co., Ltd., Beijing, China) was used to observe and take pictures.
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