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5 protocols using anti brdu

1

Histological Analysis of Mouse Bone Samples

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Freshly isolated femurs were fixed in 4% paraformaldehyde overnight, followed by 1 to 3 days decalcification in 10% EDTA. For paraffin section, bone samples were processed with Sakura Tissue Tek VIP 5 Tissue Processor (Sakura America, Torrance, CA), and paraffin sections were cut in 5um thickness. Sections were deparaffinized with xylene, followed by Alcian Blue-Hematoxylin-Orange G staining. For frozen section, bone samples were processed with the CryoJane tape-transfer system. Sections were blocked with Power Block™ Universal Blocking Reagent for 30 min to 1 hr and then stained overnight with anti-BrdU (GE Healthcare RPN202 1: 100), rabbit-anti-Aggrecan (Millipore, 1:300), rabbit-anti-Perilipin (Cell Signaling, 1:300) and goat-anti-Osteopontin (R&D, 1:300). Donkey-anti-goat Alexa Fluor 488 and Donkey-anti-goat Alexa Fluor 647 were used as secondary antibodies (all from Invitrogen, 1:300). Antibodies were diluted with Antibody Diluent Solution (Invitrogen 00–3218). Slides were mounted with FLUORO-GEL (Electron Microscopy Science 1798510), and images were acquired with an Olympus slide scanner.
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2

Immunohistological Analysis of Mouse Tissues

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For immunohistology, mouse tissues were fixed in 4% paraformaldehyde at 4°C overnight and embedded in paraffin as described previously[60 (link)–62 (link)], then followed by hematoxylin and eosin staining (H&E staining) according to standard procedures. Afterward, the sections or slides were stained with immunohistochemistry (IHC). The primary antibodies are anti-insulin [1:100, Cell Signaling Technology (CST), USA], anti-glucagon (1:100; CST, USA), anti-Ki67 (1:300; Abcam) and anti-BrdU (1:50; GE Healthcare).
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3

Quantifying Cell Proliferation by BrdU Assay

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BrdU (bromodeoxyuridine) assay was carried out to measure the amount of proliferating cells wherein cells were incubated with BrdU (Sigma, St. Louis, MO) solution for 1 h at 37°C. Cells were washed with PBS and fixed in 4% para-formaldehyde. Permeabilization in PBS containing 0.1% triton was followed by incubation with 1 (N) HCl on ice for 10 mins and 2 (N) HCl at RT for 10 mins. Phosphate citric acid buffer pH 7.4 was added and cells were incubated at RT for 10 mins prior to washes with PBS containing 0.1% triton. Cells were blocked in 5% bovine serum albumin for 1 h at 4°C and incubated overnight with anti-BrdU (1:500) (Cat #RPN202, RRID : AB_2314032, GE Healthcare, Buckinghamshire, UK) at 4°C. Following day, cells were incubated with Alexa Fluor 594-conjugated anti-mouse secondary antibody (Cat #A-11032, RRID : AB_2534091, 1:1000) (Invitrogen, Carlsbad, CA) for 1 h at RT. Cells were washed with PBS and nuclei were counterstained with DAPI. Cells were mounted on slides and observed under fluorescence microscope (Nikon-Eclipse-Ti-S, Tokyo, Japan). The number of BrdU positive cells was counted and graphically presented relative to the control.
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4

Chlamydia Infection and DNA Damage Response

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The antibodies and sources used were as follows: anti-BrdU from GE Healthcare; pChk2 (Th68), ATM (D2E2 pATM) (Ser1981), and pMre11 (Ser676) from Cell Signaling; gH2AX (Ser139) from Upstate; pATM (Ser1981), Mre11, Chk1, NBS1, pNBS1 (S343), and PP2A C (p-Y307) from Abcam; goat-anti-Chlamydia major outer membrane protein (MOMP) from AbD Serotec; Chlamydia HSP60 from Enzo Life Sciences; β-actin from Sigma; and mouse anti-Chlamydia MOMP KK12 from the University of Washington. Secondary antibodies conjugated to horseradish peroxidase (HRP) were purchased from Amersham Biosciences, and secondary antibodies labeled with Cy2, Cy3, or Cy5 were from Jackson Immuno Research Laboratories. Hoechst stain was purchased from Sigma and Draq5 from Cell Signaling. All reagents were used for Western blotting or immunofluorescence at the dilutions recommended by the manufacturers. Chemicals were obtained from the following sources: okadaic acid (OA) from Santa Cruz, etoposide and FTY720 from Sigma, and ATM kinase KU-55933 inhibitor from Merck Millipore.
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5

BrdU Labeling and Immunostaining of Cells

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Mice were initially injected intraperitoneally with 100 mg BrdU/kg body mass then given BrdU in their drinking water (1 mg/mL BrdU, 1% glucose) for 14 consecutive days until sacrifice. Cells were then FACS sorted as described above and plated without mitogens on poly-D-lysine- and laminin-coated 8-well glass slides (Millicell) for 2 hours and then fixed in 2% paraformaldehyde. For BrdU detection, cells were permeabilized for 5 minutes at RT in 0.5% Triton X-100 PBS. Incubation in blocking solution (PBS, 0.05% Tween 20, 4% BSA) at 37 °C for 1 hour was followed by a 30-minute incubation at 37 °C with anti-BrdU at 1/150 (GE Healthcare) in DNase incubation buffer (0.5X PBS, 30 mM Tris-HCl pH 8, 0.3 mM MgCl2, 0.5 mM 2-mercaptoethanol, 0.5% BSA and 10 μg/mL DNase I). After several washes, cells were incubated with an Alexa fluor-conjugated donkey secondary antibody at 1:500 (Invitrogen).
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