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Confocal fluorescence microscopy

Manufactured by Zeiss
Sourced in Germany, United States

Confocal fluorescence microscopy is an optical imaging technique that allows for the high-resolution imaging of fluorescently-labeled specimens. The core function of this equipment is to produce detailed, three-dimensional images by scanning the sample with a focused laser beam and detecting the emitted fluorescence light.

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40 protocols using confocal fluorescence microscopy

1

Visualizing EV Uptake and circEHD2-ASO Internalization

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The EVs derived from RCC cells were labeled by using the PKH26 Red Fluorescent Cell Linker Kit (Umibio, Shanghai, China). Then MRC5 cells were incubated with the PKH26-labeled EVs in the dark overnight. After the cells were stained by 4′,6-diamidino-2-phenylindole (DAPI), confocal fluorescence microscopy (Carl Zeiss AG, Jenna, Germany) was used to observe the internalization of EVs.
For the internalization of circEHD2-ASO, Cy3-labeled circEHD2-ASO was incubated with human RCC cells (OSRC-2 and 786-O) in the dark for 24 h. Then, the PKH67 Green Fluorescent cytomembrane Linker Kit (Solarbio, Beijing, China) was used to label the cytomembrane of RCC cells at 4℃ for 20 min. Next, the cells were washed twice with phosphate buffered saline (PBS), before DAPI was used to stain the nuclei of the RCC cells. The internalization of circEHD2-ASO in RCC cells was photographed by confocal fluorescence microscopy (Carl Zeiss AG, Jenna, Germany). The sequence of circEHD2-ASO was described in the Table S2.
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2

Visualizing CXCR3 Expression and Internalization

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Tissue sections were fixed with 5% paraformaldehyde for 10 min and frozen in OCT-embedding medium. Frozen sections (8-μm thick) were blocked with 5% normal rabbit serum for 30 min and incubated overnight with goat anti-CXCR9 or goat anti-CXCL10 (10 μg/ml; R&D) at 4°C. Slides were rinsed and incubated with rabbit anti-goat IgG Alexa Fluor 555 and DAPI for 30 min and then mounted and analyzed via confocal fluorescence microscopy (Zeiss, Germany). For ligand-induced receptor internalization, mouse effector T cells were prepared according to standard protocols (Meiser et al., 2008 (link)). Following staining with rabbit anti-mouse CXCR3 (5 μg/ml), cells were washed and incubated with or without CXCL11 (500 ng/ml) at 37°C for 30 min. Cells were then fixed in 4% paraformaldehyde and permeabilized in 1 % saponin buffer, blocked and stained with Cy3-conjugated goat anti-rabbit IgG at 4°C for 30 min. Slides were mounted and then analyzed via confocal fluorescence microscopy (Zeiss, Germany).
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3

Immunofluorescence Imaging of Alzheimer's Markers

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For immunofluorescence, tissues were permeabilized in 0.1% PBS-T for 15 min. To retrieve antigens, the samples were boiled in 0.1 M citrate buffered saline (pH 6.0) for 5 min. The sections were cooled for 30 min and then washed twice in PBS (5 min each). After washing in PBS-T for 30 min, the sections were blocked for 1 h in blocking solution (4% normal donkey serum in PBS-T). The sections were incubated with primary antibody overnight at 4 °C. Anti-oligomer A11 (Invitrogen, CA, USA) (1:100), Anti-6E10 (Aβ1–16) (Covance, NJ, USA) (1:500), Anti- D54D2 (Aβ1–40, Aβ1–42) (Cell Signaling, MA, USA) (1:500), anti-synaptophysin (Agilent Dako, CA, USA) (1:250), anti-TH (Santa Cruz Biotech, TX, USA) (1:250), and anti-Ki67 (Cell Signaling, MA, USA) (1:250) antibodies were used. Alexa 488 and Cy3-conjugated secondary antibodies (Jackson Laboratory, Bar Harbor, ME, USA) were used. The sections were counter-stained and mounted using VECTASHIELD mounting medium with 4′,6-diamidino-2-phenylindole (DAPI; Vector Laboratories, CA, USA). The images were visualized and photographed by confocal fluorescence microscopy (Carl Zeiss, Thornwood, NY, USA).
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4

Monitoring Autophagic Flux in Hypoxic HCC Cells

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Lentiviral transfection of HCC cells was performed using mRFP-GFP-LC3 (GeneChem Co., Ltd., Shanghai, China), according to the manufacturer’s instructions. Following puromycin selection for 2 weeks, images were captured by confocal fluorescence microscopy (Carl Zeiss, Oberkochen, Germany). Yellow or red fluorescence was quantified to monitor the progression of autophagic flux under normoxia or hypoxia. The number of puncta per cell was counted in five random images. TEM was performed as previously described.11 (link)
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5

Immunofluorescence Staining of p65 in PDLSCs

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PDLSCs treated with LPS, LPS + shNC, or LPS + shEZH2 were seeded on glass bottom culture dishes in a 24-well plate, fixed with 4% paraformaldehyde (Sigma) for 10 min, and perforated with 0.2% Triton-X100 for 5 min. After blocking with 10% donkey serum (Solarbio, Beijing, China) for 20 min and washing by cold 1 × PBS (Sangon Biotech, Shanghai, China), the cells were incubated with p65 (Abcam, MA, USA) at 4°C overnight. The culture dishes were incubated with AlexaFluor488-conjugated secondary antibodies (Cell Signaling Technology, Danvers, MA, USA) for 2 h. The nuclei of cells were stained with DAPI (Solarbio, Beijing, China) for 10 min. Confocal fluorescence microscopy (Zeiss Germany, Germany) was used to capture fluorescence confocal images.
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6

Fluorescent Protein Assay for AR N/C Interactions

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Fluorescent-Two Hybrid (F2H) assay for live-cell analysis of AR N/C interactions was preformed using F2H-AR Kit (ChromoTek, Hauppauge, NY) as per the manufacture's instructions. The AR-N-terminal-transcriptional domain (N) was fused to RFP and a DNA binding domain linked AR-C-terminal LBD (C) fused to GFP were co-transfected into F2H-BHK cells containing an arrayed cognate DNA binding element. Cells were treated with vehicle, 10 nM DHT or 10 μM MPC6 for 24 hours. The AR N/C interactions were evaluated by confocal fluorescence microscopy (Zeiss, Thornwood, NY).
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7

Transfection and Confocal Imaging of BCa Cells

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BCa cells (1 × 105) were planted in a 6-well plate, and the plasmids designed and constructed by IGE Biotechnology (Guangzhou, China) were transfected into the cells. After 48 h incubation, the transfected cells were seeded into confocal dishes the day before use. The images were captured via confocal fluorescence microscopy (Carl Zeiss AG, Jenna, Germany).
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8

Immunocytochemical Analysis of YAP

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The transfected cells were fixed with 4% paraformaldehyde for 20 min. The cells were incubated in 0.1% Triton X-100 for 4 hours at room temperature to achieve permeabilization. The cells were blocked in the blocking solution for 60 min and gently shaken on a shaker. The blocking solution was removed by washing with phosphate-buffered saline (PBS), and the samples were incubated with diluted primary antibodies against YAP (1:250; Abcam) for 60 min. The primary antibodies were removed, and the cells were washed 3–5 times with PBS for 3–5 min each time. After removing the washing solution, 1 ml of Alexa Fluor488-conjugated secondary antibodies (Beyotime, Shanghai, China) was added and incubated for 60 min in the dark. Fluorescence confocal images was captured by confocal fluorescence microscopy (Zeiss Germany, Germany).
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9

Transwell Assay for Immune Cell Transmigration

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MIM-RT cells stably expressing GFP were added on top of the Transwell membranes (Corning, New York, NY, USA) that was covered with a monolayer of RFP-expressing mLSECs (mLSECs-R) on the bottom of the Transwell. The transmigration was performed in the presence of 2.5 ng/mL TGF-β1 for 1, 2, 3, 4, 5 and 24 h. The Transwell filter inserts were subsequently fixed with 4% phosphate-buffered formalin and analyzed by confocal fluorescence microscopy (Zeiss, Oberkochen, Germany) using the tile scan function to obtain high resolution large field images.
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10

Measuring Fecundity Effects of CXL and CXR

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The young adult worms were transferred to 2% agarose pads on slides and anesthetized with 1 M sodium azide. The bright field image of at least 30 worms per group was captured using a confocal fluorescence microscopy (Carl Zeiss, Jena, Germany). The body size was analyzed using ImageJ software.
Determination of the effects of CXL and CXR on fecundity according to the method of Dulovic et al. (2016) (link). Every synchronized worm (pre-treated with CXL and CXR) at L4 began to transferred to a fresh NGM plates every 24 h and allowed to lay eggs during the breeding period. The Eggs were allowed to hatch into the L1-4 larval stage for easy observation and the total offspring produced by each individual was counted per day and finally summed up. The test was performed three times and about 10 worms in each group.
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