The largest database of trusted experimental protocols

17 protocols using novocastra

1

Immunohistochemical Labeling of Breast Cancer Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemical labeling was performed according to standard protocols on serial 2.5 μm thick sections from the original blocks or the TMA blocks. To assure optimal reactivity, immunostaining was applied 7–10 days after sectioning at the Laboratory of Molecular Oncology of the Hellenic Foundation for Cancer Research, Aristotle University of Thessaloniki School of Medicine. The staining procedures for HER2 (A0485 polyclonal antibody, Dako, Glostrup, Denmark), estrogen receptor (ER, clone 6F11, Novocastra™, Leica Biosystems, Newcastle, U.K), progesterone receptor (PgR, clone 1A6, Novocastra™, Leica Biosystems) and Ki67 (clone MIB-1, Dako) were performed using a Bond Max™ autostainer (Leica Microsystems, Wetzlar, Germany), as previously described in detail [25 (link)–28 (link)]. The staining procedures for OPN (clone OP3 N, code NCL-O-PONTIN, Novocastra™, Leica Biosystems) were also performed using a Bond Max™ autostainer, as previously described [29 (link)].
+ Open protocol
+ Expand
2

Immunohistochemical Analysis of DNA Mismatch Repair Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue microarrays (TMAs) were constructed from FFPE curettage and hysterectomy biopsies as previously described [23 (link), 24 (link)]. The TMA slides (5 µm) were dewaxed in xylene and rehydrated in ethanol before antigen retrieval in target retrieval solution at pH 9 or pH 6 for 15 min in microwave followed by peroxidase block (S2023, Dako, Glostrup, Denmark) for 8 min at room temperature. Sections were incubated for 60 min at room temperature with anti-MSH6 monoclonal mouse antibody (1:25, NCL-L-MSH6, NovocastraTM, Leica Biosystems Newcastle, United Kingdom) or anti-PMS2 monoclonal mouse antibody (1:25, PMS2-L-CE; NovocastraTM, Leica Biosystems Wetzlar, Germany) or incubated for 30 min at room temperature with anti-MLH1 monoclonal mouse antibody (1:100; NCL-L-MLH1; NovocastraTM, Leica Biosystems Newcastle, UK) or anti-MSH2 monoclonal mouse antibody (1:50; NCL-l-MSH2–612; NovocastraTM, Leica Biosystems Newcastle, UK). All sections were incubated for 30 min with a secondary anti-mouse antibody (Agilent Technologies, Santa Clara, USA). Staining was visualised with diaminobenzidine peroxidase (DAB) (EnVision detection system, K3468, Dako, Glostrup, Denmark). Sections were counterstained with hematoxylin (S3301, Dako, Glostrup, Denmark) before dehydration and mounting.
+ Open protocol
+ Expand
3

Optimized Immunohistochemical Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemical labeling was performed according to standard protocols on serial 2.5 μm thick sections from the original blocks or the TMA blocks. All cases were also stained for vimentin (clone V9, Dako, Glostrup, Denmark) and cytokeratin 8/18 (clone 5D3, NovocastraTM, Leica Biosystems, Newcastle, U.K), which were used as control stains for tissue immunoreactivity and fixation, as well as identification of tumor cells. Tissue samples negative for the above antibodies (21 of 975, 2.2%) were excluded from the study. To assure optimal reactivity, immunostaining was applied 7 to 10 days after sectioning at the Laboratory of Molecular Oncology of the Hellenic Foundation for Cancer Research, Aristotle University of Thessaloniki School of Medicine. The staining procedures for vimentin, cytokeratin 8/18, HER2 (A0485 polyclonal antibody, Dako), estrogen receptor (ER, clone 6F11, NovocastraTM, Leica Biosystems), progesterone receptor (PgR, clone 1A6, NovocastraTM, Leica Biosystems) and Ki67 (clone MIB-1, Dako) were performed using a Bond MaxTM autostainer (Leica Microsystems, Wetzlar, Germany), as previously described in detail [33 (link)–35 (link)].
+ Open protocol
+ Expand
4

Immunohistochemical Analysis of Osteopontin and MMPs

Check if the same lab product or an alternative is used in the 5 most similar protocols
The antibodies used were mouse monoclonal anti-OPN (clone OP3N, NOVOCASTRA; Leica Biosystem, Newcastle Upon Tyne, UK) and mouse monoclonal anti-MMP-9 (clone 15W2, NOVOCASTRA; Leica Biosystem, Newcastle Upon Tyne, UK), and mouse monoclonal anti-MMP-2 (clone6E3F8, ABCAM; Biotech, Life Sciences, Cambridge, MA, USA). All antibodies were optimized and validated for IHC in previous studies (Li et al., 2017 (link); Perrotta et al., 2011 (link); Sulik & Chyczewski, 2008 (link)).
+ Open protocol
+ Expand
5

EBV Latency and MYC/IGH Translocations

Check if the same lab product or an alternative is used in the 5 most similar protocols
Epstein-Barr virus (EBV) latency was assessed by in situ hybridization using the probes (Novocastra; Leica Biosystems, Wetzler, Germany for BL and ZytoFast EBV-CISH system; ZytoVision, Bremerhaven, Germany for HL) against EBV-encoded small RNAs (EBER1 and EBER2). C-MYC/IGH translocations were analyzed by fluorescence in situ hybridization using a break-apart probe (Vysis MYC; Abbott, Abbott Park, IL). The studies used formalin-fixed, paraffin-embedded tissue on 22 BLs and 33 HLs.
+ Open protocol
+ Expand
6

Immunohistochemical Analysis of Hepatic Inflammation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemical studies were performed on paraffin-embedded liver tissue sections of 5 μm thickness, previously deparaffinized and rehydrated by using a standard technique. Rabbit polyclonal anti-TNF-α, IL-6, or NF-κB p65 diluted 1:100 (Santa Cruz, California) were used as primary antibodies. Immunoreactions were visualized employing Novocastra (Leica Biosystems, Germany), Peroxidase/DAB kit (Wetzlar, Germany), according to the manufacturer’s instructions. Negative control sections were processed by substitution of primary antibodies with irrelevant immunoglobulins of matched isotype used in the same conditions as primary antibodies. Stained slides were analyzed by light microscopy.
+ Open protocol
+ Expand
7

Quantitative Immunohistochemistry of Tryptase and CD31

Check if the same lab product or an alternative is used in the 5 most similar protocols
Four μm paraffin-embedded tissues sections were retrieved on and incubated with antibodies against tryptase (DAKO, Glostrup, Denmark) and CD31 (Novocastra, Leica Biosystems, Nussloch, Germany) according to manufacturers’ instructions. The slides were then incubated with biotinylated anti-mouse Igs, peroxidase-conjugated streptavidin and diaminobenzidine (DAB). Counterstaining was performed with hematoxylin. Ten slides were scanned for each antibody using the whole-slide scanning platform Aperio Scanscope CS (Leica Biosystems, Nussloch, Germany), then were assessed with the Positive Pixel Count algorithm embedded in the AperioImageScope software and reported as a percentage of positivity, defined as the number of positively stained pixels on the total of pixels of the image.
+ Open protocol
+ Expand
8

Immunohistochemical Analysis of Larval Muscles

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunohistochemical staining, whole larvae were fixed in 4% paraformaldehyde overnight at 4 °C and stored in 100% methanol at −20 °C. Following rehydration with a 50% methanol solution in phosphate buffered saline (PBS) containing 0.05% Tween 20 (PBS-T) and blocking with 2% casein in PBS-T to reduce non-specific immunoreactions, larvae were incubated with either anti-beta dystroglycan (1:100, Novocastra; Leica Biosystems, Wetzlar, Germany) or anti-myosin heavy chain (MHC) (F59, 1:25; Santa Cruz Biotechnology, Dallas, TX, USA) antibodies at 4 °C overnight. After washing several times, the larvae were incubated with a secondary antibody (1:500, anti-mouse AlexaFluor 488; Thermo Fisher Scientific, Waltham, MA, USA) for 30 min at room temperature. The stained larvae were then observed using a confocal microscope (LCM710; Carl Zeiss Microscopy GmbH, Jena, Germany).
+ Open protocol
+ Expand
9

Assessing BL Latency and Translocations

Check if the same lab product or an alternative is used in the 5 most similar protocols
BL EBV latency was assessed by chromogenic in situ hybridization (ISH) using the Novocastra (Leica Biosystems, Wetzler, Germany) probe for EBER. C-MYC/IGH translocations were analyzed by fluorescence in situ hybridization using a break-apart probe (Vysis MYC, Abbott Laboratories, Abbott Park, IL). EBER and MYC translocation studies used formalin-fixed, paraffin-embedded tissue of 24 BL.
+ Open protocol
+ Expand
10

Immunohistochemical Analysis of Liver Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemical studies were performed on paraffin embedded liver tissue sections of 5 μm thickness, previously deparaffinized, and rehydrated by using a standard technique. Rabbit polyclonal anti-TNF-α, IL-6, and NF-κB p65 diluted 1 : 100 (Santa Cruz, CA, USA) were used as primary antibodies. Immunoreactions were visualized employing Novocastra (Leica Biosystems, Germany), Peroxidase/DAB kit, according to the manufacturer's instructions. Negative control sections were processed by substitution of primary antibodies with irrelevant immunoglobulins of matched isotype, used in the same conditions as primary antibodies. Stained slides were analyzed by light microscopy (Olympus BX43, Hamburg, Germany).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!