The largest database of trusted experimental protocols

145 protocols using fm1 43

1

Evaluating Neurotransmitter Vesicle Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
iPSC-derived dopaminergic neurons were grown until 48 DIV and were then imaged with FM1-43 (Thermo Fisher Scientific). Cells were washed in HBSS−/− supplemented with 5 mM glucose and 10 mM HEPES. 2 μM FM1-43 was then applied for 1 min before uptake was induced with 75 mM NaCl and 10 mM KCl and left for 1 min before being washed in HBSS−/− solution (Thermo Fisher Scientific). Images were acquired at 37C in 5% CO2 on the Opera Phenix (Perkin Elmer) at 63× magnification. Images were quantified in ImageJ by measuring the fluorescence intensity of puncta at each timepoint.
+ Open protocol
+ Expand
2

Quantification of FM1-43 Fluorescence

Check if the same lab product or an alternative is used in the 5 most similar protocols
The labeling and quantification of FM1-43 intensities was performed as previously described.103 (link) Third instar larvae were dissected in fresh Ca2+ free HL3, nerves were cut and larvae subsequently incubated for 1 min in HL3 with 4 μM FM 1-43 (Invitrogen), 1.5 mM CaCl2 and 90 mM KCl. Multiple steps of washing with HL3 before imaging removed the non-internalized dye. Images of FM 1-43 were captured with an upright widefield microscope (Nikon Eclipse FN1), fitted with 60X (NA 1.0) water dipping lens and stored using NIS elements. Mean boutonic intensities were determined, after background substraction, using ImageJ.
+ Open protocol
+ Expand
3

Quantifying Prey Ingestion in Naegleria

Check if the same lab product or an alternative is used in the 5 most similar protocols
To label the green and pale S. elongatus prey with fluorescence, the cells were suspended in 25 μg/mL FM1–43 (Invitrogen) dissolved in BG-11−16 and incubated at room temperature in the dark for 12 h. Then, the stained prey was washed three times with BG-11−16.
Naegleria sp. (1500 cells/mm2) was co-cultured with FM1–43-stained prey (9.0 × 104 cells/mm2) in 1 mL of BG-11−16 in a well of 24-well culture plates at 25 °C for 4 h in the dark for Naegleria sp. cells to ingest the prey. Then, the liquid medium and free bacterial prey were removed from the well as much as possible by gentle rinsing with BG-11−16, and Naegleria sp. adhering to the bottom of the plate was resuspended in 300 μL of BG-11−16. Then, the samples were put on MAS-coated slide glass (#S9115, Matsunami) and incubated at 25 °C in the dark for 30 min to immobilize the Naegleria sp. cells on the glass and inhibit them from continuing to ingest bacterial prey. Then (hour 0), the glass on which Naegleria sp. cells were immobilized was incubated in a Petri dish with moist filter paper at 25 °C under dark or light (200 µE m−2 s−1) conditions. Micrographs by fluorescence microscopy were taken every hour from hour 0 to 4. The fluorescence intensity of prey that in Naegleria sp. cells  (per area of the cells) and outside the cells (as a control) (per area) was determined with ImageJ software65 .
+ Open protocol
+ Expand
4

Rhamnolipid Quantification in P. aeruginosa

Check if the same lab product or an alternative is used in the 5 most similar protocols
Rhamnolipids in the P. aeruginosa EMEM-conditioned medium were measured by adding FM 1-43 (N-(3-triethylammoniumpropyl)-4-(4-(dibutylamino) styryl) pyridinium dibromide) (Invitrogen) to a final concentration of 20 µg/mL. FM 1-43 fluorescence was measured on a Cytation5 Multimode Reader (Ex. 475 nm; Em. 595 nm).
+ Open protocol
+ Expand
5

Quantifying Cytotoxic T-Cell Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
FM1-43 was performed as described previously (60 ). Melanoma cells were left unpulsed or pulsed with 10 μM antigenic peptide (or lower concentrations when indicated) for 2 hours at 37°C/5%CO2, washed three times, and subsequently transferred to a 96-well U-bottom plate at 20 × 103 cells per 25 μl of RPMI 1640 5% FCS/Hepes. CTLs were previously stained with CTV (Invitrogen) for 20 min at 37°C/5% CO2, washed, and added to the target cells at a two CTL/one target cell ratio in 25 μl of RPMI 1640 5% FCS/Hepes. Fifty microliters of FM1-43 (20 μg/ml) (Invitrogen) in RPMI 1640 5% FCS/Hepes was added in 50 μl of cells already contained in the well (FM1-43 final concentration was 10 μg/ml). In some experiments, D10 cells were pretreated with 50 μM BAPTA-AM for 2 hours at 37°C (Invitrogen) and thoroughly washed before conjugation with CTLs. Cells were pelleted for 1 min, 455g and incubated at 37°C/5% CO2 for 2, 5, or 15 min. At the end of each incubation time, CTL/melanoma cell cocultures were resuspended and washed in ice-cold phosphate-buffered saline (PBS) containing 2 mM EDTA to dissociate CTL/melanoma cell conjugates. Cells were stained with fixable viability dye eFluor 780 (eBioscience) on ice at 4°C for 30 min in FACS buffer (PBS 1% HS, 1% FCS, and 0.01% azide). Samples were acquired using MACS Quant Analyzer 10 (Miltenyi Biotec). Results were analyzed using the FlowJo 10 software.
+ Open protocol
+ Expand
6

Real-time Exocytosis Imaging with FM1-43 Dye

Check if the same lab product or an alternative is used in the 5 most similar protocols
Exocytosis was assessed by real‐time imaging using the fluorescent dye, FM1‐43 (Molecular Probes, Inc., Eugene, OR), as described.19 FM1‐43 is weakly fluorescent in aqueous solution, but its fluorescence increases >300‐fold when it binds plasma membrane; thus, it is a useful dye for the measurement of increases in plasma membrane attributed to fusion of vesicle membrane with the plasma membrane during exocytosis. Changes of FM1‐43 fluorescence were measured at excitation wavelength 480 nm and emission wavelength at 535 nm and reported as % change in fluorescence.
+ Open protocol
+ Expand
7

FM1–43 Labeling of Mouse Cochlear Sensory Epithelia

Check if the same lab product or an alternative is used in the 5 most similar protocols
The function of the MET channels of mouse cochlea was assessed by FM1–43 labeling as described previously29 (link). Briefly, cochlear sensory epithelia of P1 mice were carefully dissected out in cold Hepes-buffered Hanks’ balanced salt solution (HBHBSS. Sigma) and cultured in DMEM/F12 with 7% Fetal calf serum (FCS) (Fisher Scientific) and 5 mg/ml ampicillin (Sigma) on Cell-Tak-coated glass coverslips in Mat-Tk dishes (MatTek Corporation) at 37 °C. After overnight culture, the cochlea was rinsed briefly in HBHBSS and then dipped in HBHBSS containing 3 µM FM1–43 (ThermoFisher Scientific) for 10 seconds (s) and rinsed 3 times in fresh HBHBSS solution. The coverslip was immediately mounted on slide and imaged with fluorescent light microscope (Leica) equipped with epifluorescence optics and FITC filters (488 nm excitation, 520 nm emission).
+ Open protocol
+ Expand
8

Optogenetic Control of Lateral Line Hair Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The zebrafish mutant allele lhfpl5bvo35 and transgenic lines Tg(myo6b:EGFP-lhfpl5a)vo23 and Tg(myo6b:EGFP-PA)vo68 were used in this study (Erickson et al., 2017 ; Erickson et al., 2020 (link)). For all experiments, lhfpl5bvo35 homozygotes were identified from their hetero- and homozygous wild type siblings by lack of FM 1–43 (ThermoFisher) labeling of the lateral line hair cells.
To create a fish line that expresses the Channelrhodopsin-2 (ChR2) optogenetic protein solely in the hair cells of the lateral line, approximately 2 kb of DNA upstream of the start codon of the lhfpl5b gene was cloned into the p5E plasmid of the recombination-based multisite Gateway cloning system (ThermoFisher). A Tol2 transposon backbone was then used to create the injectable expression plasmid lhfpl5b2028:ChR2-EYFP-PA. This plasmid was then co-injected with transposase mRNA into single-cell embryos (Kwan et al., 2007 (link)) to create the Tg(lhfpl5b2028:ChR2-EYFP-PA) zebrafish line.
+ Open protocol
+ Expand
9

Imaging Hair Cell Fluorescence

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cochleae were isolated from Atoh1Cre/+;Insm1F/F at P5 and explants set up as described above. After 6 days in vitro, explants were washed in HBSS (14025076, Thermo Fisher Scientific). Once in wash, a 10 μM FM1-43 (T3163, Thermo Fisher Scientific) working solution was prepared in HBSS. The HBSS wash was removed, and the FM1-43/HBSS solution was added and allowed to sit for 20 s. Cultures were then washed three times in HBSS and immediately examined for fluorescence with a Nikon E600 upright fluorescence microscope [first with a Plan Apo 10× lens (with a numerical aperture of 0.45) to locate the tissue and then with a Fluor 40× immersion lens (with a numerical aperture of 0.8 W)]. Images were captured using a Nikon DS-Ri2 Color complementary metal-oxide semiconductor camera. Cultures were then fixed in 4% PFA in PBS for 30 min at room temperature and processed for immunostaining and confocal microscopy, as described above, to label the oc-IHCs.
+ Open protocol
+ Expand
10

FM1-43 Dye Labeling of Auditory Hair Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
FM 1–43 dye solution was prepared by dissolving a 10 µg/µl stock of FM 1–43 (Thermo Fisher, Cat no. T35356) dye in EBSS/HBSS to a final concentration of 2 µg/ml in 0.5 ml. One cochlea at a time was dissected from live P8 experimental mice and placed on a glass slide. The tissue was incubated in 20 µl of the dye solution for 10–12 s and immediately washed with 1 X PBS. The orientation of the tissue was checked followed by the addition of mounting medium. The mounted tissue was sealed with a glass coverslip and imaged under the 488 (green) channel of a Zeiss fluorescence microscope. The light intensity and brightness were normalized for images captured from different samples using the endogenous hair cells as a reference. For labeling of P15 animals, temporal bones were dissected from the skull and the semicircular canals removed. Using a 30 gauge needle, a fenestra was created at the helicotrema and FM1-43 FX was injected into the cochlear duct and incubated for ~30 s. To remove the FM 1–43 FX, 4% paraformaldehyde (16% stock, 18814–10, Polysciences) was injected into the cochlear duct and cochlea were fixed overnight at 4 °C. Fixed cochlea were decalcified with 0.25 M EDTA for 6 hr at room temperature, followed by dissection of the sensory epithelium. Tissue was mounted in ProLong Gold (Invitrogen) and imaged with a Zeiss LSM 880 confocal microscope.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!