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Odyssey clx quantitative ir fluorescent detection system

Manufactured by LI COR

The ODYSSEY CLx quantitative IR fluorescent detection system is a laboratory instrument designed for the quantitative detection of infrared fluorescent labeled samples. It utilizes near-infrared fluorescence technology to provide sensitive and accurate measurements of protein, nucleic acid, and small molecule targets.

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4 protocols using odyssey clx quantitative ir fluorescent detection system

1

Characterization of SHP2 Inhibition Assay

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Ptpn11fl/fl MEFs expressing CRE‐ERTam, Swiss 3T3 fibroblasts, or HEK293T cells were seeded on 6‐well plates (MEFs and 3T3 cells, 2 × 105/well; HEK293T cells, 5 × 105/well), followed by serum starvation (MEFs and 3T3 cells, no FBS; HEK293T cells, no FBS or 0.1% FBS) for 16 h. Starved cells were then stimulated with PDGF‐BB (50 ng·mL−1, final concentration) or EGF (1 ng·mL−1 or 50 ng·mL−1, final concentration), as indicated. For inhibitor treatment, cells were pre‐incubated for 3 h (NSC‐87877) or 30 min (other SHP2 inhibitors) in media (1 mL/well) containing the indicated concentrations of each compound with 0.5% DMSO or 0.5% DMSO alone, followed by addition of 10 μL of medium containing 5 μg·mL−1 PDGF‐BB (50 ng·mL−1, final concentration). Cells were lysed in SDS lysis buffer (50 mm Tris/HCl pH 7.5, 100 mm NaCl, 1 mm EDTA, 1% SDS, 2 mm Na3VO4). Lysates were resolved by SDS/PAGE, followed by transfer to Immobilon‐FL PVDF membranes (Millipore). Membranes were blocked in 1% BSA/TBS containing 0.1% Tween‐20 for 30 min and treated with primary antibodies in blocking buffer for 1 h, followed by treatment with IRDye‐conjugated secondary antibodies (LI‐COR). Images were obtained using an ODYSSEY CLx quantitative IR fluorescent detection system (LI‐COR) with Image Studio software Ver. 5.2 (LI‐COR).
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2

Cell Lysis and Western Blot Analysis

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Cell pellets were resuspended in SDS lysis buffer (50 mM Tris–HCl pH 7.5, 100 mM NaCl, 1 mM EDTA, 1% SDS, 2 mM Na3VO4), supplemented with protease (40 µg/ml PMSF, 2 µg/ml antipain, 2 µg/ml pepstatin A, 20 µg/ml leupeptin, and 20 µg/ml aprotinin) and phosphatase (10 mM NaF, 1mM Na3VO4, 10 mM β-glycerophosphate, and 10 mM sodium pyrophosphate) inhibitors. Total lysate was resolved by SDS–PAGE, followed by transfer to Immobilon-FL PVDF membranes (Millipore). Membranes were blocked in 1% BSA/TBS containing 0.1% Tween20 for 30 min. and incubated for 1h in blocking buffer containing the indicated antibodies (Supplemental Table S3), followed by IRDye-conjugated secondary antibodies (LI-COR). Images were obtained by using a LI-COR ODYSSEY CLx quantitative IR fluorescent detection system.
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3

Protein Immunoblotting Protocol

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Cells were lysed in SDS lysis buffer (50 mM Tris-HCl pH7.5, 100 mM NaCl, 1 mM EDTA, 1% SDS, 2 mM Na3VO4), and subjected to SDS-PAGE, followed by transfer to Immobilon-FL PVDF membranes (Millipore). Membranes were blocked in 1% BSA/TBS containing 0.1% Tween20 for 30 min, and treated with primary antibodies in blocking buffer for 1 h, followed by treatment with IRDye-conjugated secondary antibodies (LI-COR). Images were obtained by using an ODYSSEY CLx quantitative IR fluorescent detection system (LI-COR), and quantified with Image Studio software Ver. 5.2 (LI-COR).
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4

Organoid Western Blot Analysis

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Organoids were released from Matrigel and the cell pellets were lysed in SDS lysis buffer (50 mM Tris–HCl pH 7.5, 100 mM NaCl, 1 mM EDTA, 1% SDS, 2 mM Na3VO4), and subjected to SDS–PAGE, followed by transfer to Immobilon-FL PVDF membranes (Millipore). Membranes were blocked in 1% BSA/TBS containing 0.1% Tween20 for 30 min, and treated with primary antibodies in blocking buffer for 1 h, followed by treatment with IRDye-conjugated secondary antibodies (LI-COR). Primary antibodies were Tp53 1:1000 (P53-CM5P-L, Leica), Erk2 1:1000 (sc-1647, Santa Cruz), T1211:1000 (Anti-SV40 T Antigen (Ab-1) Mouse mAb (PAb419) (DP01)), γ-H2AX 1:1000 (05-636, Thermo Fisher Scientific). Images were obtained by using an ODYSSEY CLx quantitative IR fluorescent detection system (LI-COR). Unprocessed images of scanned immunoblots shown in Fig. 6d, Supplementary Fig. 4a are provided in a Source Data file.
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