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Pilatus 1m

Manufactured by Dectris
Sourced in Switzerland

The Pilatus 1M is a hybrid pixel detector designed for X-ray diffraction and imaging applications. It features a sensitive active area of 169 x 179 mm² with 981 x 1043 pixels. The detector operates at frame rates up to 300 Hz and offers high dynamic range and low noise performance.

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23 protocols using pilatus 1m

1

Small-Angle X-ray Scattering Characterization of Copolymer Dispersions

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SAXS analyses
of copolymer dispersions were conducted using a Xeuss 2.0 (Xenocs)
SAXS instrument equipped with a FOX 3D multilayered X-ray mirror.
X-rays were generated from a liquid gallium MetalJet X-ray source
(Excillum, λ = 1.34 Å) and collimated using two sets of
scatterless slits. The scattering intensity was measured on a hybrid
pixel area detector (Pilatus 1M, Dectris) at a sample-to-detector
distance of approximately 1.20 m (calibrated using a silver behenate
standard). Two-dimensional (2D) SAXS patterns were reduced to 1D plots
by azimuthal integration using a Foxtrot software package.
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2

Synchrotron X-ray Scattering of Biomolecular Solutions

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All solution X-ray scattering data were acquired at the 16-ID (LiX) beamline of the National Synchrotron Light Source II (NSLS II) at Brookhaven National Laboratory. 38 Sixty µL of solution samples and their matching bu↵ers were manually loaded and individually measured in a continuous flow mode with five 2-second exposures. The momentum transfer of the scattered X-ray photons is defined as q = (4⇡/ ) sin ✓, where is the incident X-ray wavelength in Å and ✓ is half of the scattering angle. Solution X-ray scattering data with a q range of 0.005 to 3.2 Å 1 were recorded using a Pilatus 1M (small angle) and two Pilatus 300K (wide angle) detectors (Dectris, Switzerland) in vacuum. On-site frame-to-frame data screening was done by py4xs package 38 to ensure matching of pre-and post-sample bu↵ers and to ensure the absence of radiation damage. For all measurements, the signal-to-noise ratio (SNR) was above 30.0 at q = 1.0 Å 1 . The SASBDB access codes for experimental profiles used in this study are reported in Table S2.
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3

Nano-scale Bone Mineral Characterization by SAXS

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Small Angle X-ray Scattering (SAXS) was used to assess the nano-scale bone mineral structure of the cortical bone in the humerus of the female mice. Five right humeri from each group of the female mice were formalin fixed, dehydrated in a series of increasing concentration alcohol solutions and embedded in methylmethacrylate resin. A transverse slice was cut from the mid shaft and polished down to 100 μm thickness.
The I911-SAXS beamline of the MAX II ring (1.5 GeV) at the MAX IV Laboratory (Lund University, Lund) was used [34] . A monochromatic beam of wavelength 0.91 Å was obtained using a Si(111) crystal and collimated down to 100 μm by 100 μm at the sample. The q-range measured was 0.01–0.30 Å− 1. Measurements were conducted with the samples mounted on an x–y motorised stage and a step size of 100 μm with an exposure time of 5 s at each point was used to scan the cross-section of the bone [35] (link). The detector used was a PILATUS 1 M (Dectris Ltd.). The mineral plate thickness, predominant orientation and degree of orientation of the mineral crystals were calculated for each scattering image as described earlier [35–37] . Only scattering images where the signal level indicated the presence of cortical bone were analysed.
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4

Tetrablock Copolymer SAXS Characterization

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SAXS studies were
conducted on 150 ± 10 μm PNAEP85-PtBA150-PnBA400-PtBA150 and PNAEP85-PtBA150-PnBA700-PtBA150 copolymer films using
a Xeuss 2.0 (Xenocs) SAXS instrument equipped with a FOX 3D multilayered
X-ray mirror, two sets of scatterless slits for collimation, a hybrid
pixel area detector (Pilatus 1M, Dectris), and a liquid gallium MetalJet
X-ray source (Excillum, λ = 1.34 Å). SAXS patterns were
recorded at a sample-to-detector distance of approximately 1.20 m
(calibrated using a silver behenate standard). 2D SAXS patterns were
reduced to 1D plots by azimuthal integration using the Foxtrot software
package.
SAXS patterns of 1.0% w/w aqueous tetrablock copolymer
dispersions were collected at Diamond Light Source (station I22, Didcot,
UK) using monochromatic X-ray radiation (wavelength, λ = 0.124
nm, with q ranging from 0.015 to 1.3 nm–1, where q = 4π sin θ/λ is the
length of the scattering vector and θ is one-half of the scattering
angle) and a 2D Pilatus 2 M pixel detector (Dectris, Switzerland).
Glass capillaries of 2.0 mm diameter were used as a sample holder.
SAXS data were reduced (integration, normalization, and absolute intensity
calibration using a SAXS pattern recorded for deionized water, assuming
that the differential scattering cross section of water is 0.0162
cm–1) using Dawn software supplied by Diamond Light
Source.65 (link)
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5

Multimodal Microscopy and Scattering

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Scanning electron microscopy (SEM) studies were performed using a NanoSEM-200 apparatus from FEI Nova (Hillsboro, OR, USA) using mixed secondary electron/back-scattered electron in-lens detection. All the samples were observed after sputter coating with Au/Pd alloy in a 208 HR instrument from Cressington Scientific Instruments (Watford, UK) with high-resolution thickness control.
UV-VIS absorbance spectral measurements were carried out using a 2401PC double-beam spectrophotometer from Shimadzu (Tokyo, Japan) with a thin-film holder that enables the interrogation of the sensing area.
Synchrotron wide- (WAXS) and small-angle X-ray scattering (SAXS) measurements were performed at the NCD-SWEET beamline of the ALBA synchrotron facility in Barcelona, Spain. Two-dimensional detectors were used, namely, LH255-HS (Rayonix, Evanston, IL, USA) and Pilatus 1 M (Dectris, Baden Daettwil, Switzerland), to register the WAXS and SAXS patterns, respectively. The sample-to-detector distance was set to 111.7 mm for WAXS and 2700 mm for SAXS measurements, with the λ of the incident beam being 0.1 nm and the beam size being 0.35 mm × 0.38 mm (h × v). The 2D data were reduced to 1D data using pyFAI software version 0.21.3 [26 (link)]. For the processing of WAXS and SAXS patterns, the commercial package Peakfit 4.12 (2016) by SYSTAT (San Jose, CA, USA) was implemented.
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6

SAXS Analysis of Dimeric DHDDS Protein

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SAXS data were measured at beamline BM29 of the European Synchrotron Radiation Facility (ESRF), Grenoble, France. Fifty microliters of purified protein concentrated to ~8 mg/mL was chromatographed using a size-exclusion chromatography column (superdex-200 increase 10/300 GL column) pre-equilibrated with Tris-HCl, pH 7.5, 150 mM NaCl, 20 mM β-mercaptoethanol, and 0.02% Triton X-100 on an ultra-performance liquid chromatograph (Shimadzu Corporation). Data were collected in-line at 20 °C with X-ray beam at wavelength λ = 1.0 Å, and the distance from the sample to detector (PILATUS 1M, Dectris Ltd.) was 2.867 m, covering a scattering vector range (q = 4πsinθ/λ) from 0.0025 to 0.5 Å−1, with an exposure time of 1 s per frame. The 2D images were reduced to one-dimensional scattering profiles using the software on site. Frames corresponding to dimeric DHDDS were averaged and subtracted from buffer frames using ScÅtter (http://www.bioisis.net/tutorial/9). The experimental radius of gyration (Rg) was calculated from data at low q values in the range of qRg <1.3, according to the Guinier approximation: lnI(q) ≈ ln(I(0)) − Rg2q2/3 using PRIMUS. The Dmax value and the Porod volume were derived from the paired-distance distribution function (PDDF or P(r)) calculated using GNOM. The flexibility analysis was performed using ScÅtter [19 (link)].
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7

Nanotubes Characterization via SAXS

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Nanotubes were annealed as previously described, then purified using PEG precipitation. Residual PEG was removed via size exclusion centrifugation in P-30 Bio-spin columns (Bio-Rad) in DNA origami buffer. SAXS data were collected on the SAXS/WAXS Beamline at the Australian Synchrotron, Clayton, Victoria as described previously (60 (link)). Briefly, samples were passed through a 1.5-mm quartz capillary at 20°C while exposed to monochromatic X-rays (11 keV) at a flux of 4 × 1012 photons per second. SAXS data were collected with exposure times of 5 s on a Pilatus 1M photon counting detector (Dectris), and scattering intensity I(q) was collected in the range of 0.0059 < q < 0.53 Å−1, where , 2θ is the scattering angle and λ is the X-ray wavelength.
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8

SAXS Characterization of Biomolecular Samples

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In-house SAXS measurements were performed with an Mo GeniX3D microfocus X-ray tube (Xenocs SA, Sassenage, France) combined with FOX2D single reflection optics delivering a monochromatic beam with an X-ray energy of 17.4 keV (Bruetzel et al., 2016 ▸ ). The sample–detector distance was set to ∼1.11 m, yielding usable q values between 0.05 and 0.35 Å−1. We used a PILATUS 100K detector (DECTRIS Ltd, Switzerland) for X-ray detection. For each experiment, sample and buffer profiles were collected with three to five exposures of 2 h each.
All synchrotron data, except for the data presented in Figs. 6 and 7, were collected at beamline BM29 at the ESRF in Grenoble at an X-ray energy of 12.5 keV and a sample–detector distance of 2.87 m, resulting in a usable q range of 0.05–0.35 Å−1 (Pernot et al., 2013 ▸ ). We used a PILATUS 1M (DECTRIS Ltd, Switzerland) detector for data acquisition. Data were collected in ‘flow’ mode at room temperature with ten measurement frames at an exposure time of between 1 and 4 s in ‘multibunch mode’ or ‘low bunch mode’.
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9

Glutenin Films Analyzed by SAXS and WAXS

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Small-angle
X-ray scattering (SAXS) measurements of the glutenin films were performed
at the beamline I911-4 of the MAX IV Laboratory, Lund, Sweden, with
a monochromatic beam of λ = 0.91 Å and a sample-to-detector
distance of 1325 mm. The scattering vector q range
was 0.01–0.7 Å–1 (where q = (4π/λ) sin(θ) and 2θ is the scattering
angle). The sample exposure time was 2 min. A two-dimensional hybrid
pixel array detector (Pilatus 1M, Dectris) was used to register the
data. The collected data were reduced with the software bli911-4 and
normalized by the integral incident intensity and sample transmission.
Background was subtracted using an empty cell signal. Wide-angle X-ray
scattering analysis was carried out at the MAX IV Laboratory, Lund,
Sweden, using the beamline I911-2 with a wavelength of 1.0384 Å
and a sample-to-detector distance of 150 mm with a MarResearch 165
detector. The sample exposure time was 1 min. The data obtained were
analyzed by the software FIT2D. Silicon powder was used as a standard
for calibration.
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10

SAXS Analyses of PNF Alignment

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Transmission SAXS measurements were performed at the P03 beamline,
at PETRAIII storage ring at DESY in Hamburg, Germany.46 (link) The measurements were performed with an X-ray wavelength
λ = 0.97 Å and sample-to-detector distance of 9035 mm.
The scattering patterns were recorded by a single-photon counting
detector (Pilatus 1M, Dectris) with the pixel size of 172 × 172
μm2. The beam size was 33 × 27 μm2 (horizontal × vertical). The same type of flow channel
was used for the SAXS study as for the spinning experiments, but the
Plexiglas covers were replaced by Kapton films. The flow rates were
the same as the ones used for spinning (4.1, 4.7, and 24.9 mL/h for
the core flow, the first sheath flow, and the second sheath flow,
respectively). The Q2 sheath flow was varied (1.5× and 2×
the initial value) to explore the effect on PNF alignment. Alignment
order parameters of the PNFs were calculated from the scattering patterns
as described in previous work.17 (link),21 (link),22 (link)
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