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Lct premier tof mass spectrometer

Manufactured by Waters Corporation

The LCT-Premier TOF mass spectrometer is a high-performance liquid chromatography-time of flight mass spectrometer (LC-TOF MS) designed for accurate mass measurements and qualitative analysis. It features a high-resolution time-of-flight analyzer that provides precise mass data for the identification of unknown compounds.

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4 protocols using lct premier tof mass spectrometer

1

Mass Spectrometric Analysis of Protein Modifications

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Example 44

Mass spectrometry was used to analyze covalent modification of protein by selected inhibitors. Recombinant human PAD4 was used at 4 mg/ml in 20 mM Tris pH7.6, 400 mM NaCl, 5 mM TCEP. Where applicable, buffer was supplemented with 5 mM CaCl2 to determine Calcium sensitivity of modification. Inhibitors were dissolved in DMSO at final concentrations of 0.2 mM to 5 mM and incubated with protein at 27° C. for 16 hours prior to analysis. Control experiments were performed with protein and DMSO in absence of inhibitor. Samples were centrifuged for 15 seconds at 10000 rpm at room temperature immediately prior to analysis using a Waters LCT-Premier TOF mass spectrometer, using a mobile phase from 5% to 80% acetonitrile in water supplemented by 0.1% formic acid.

Inactivation Kinetics

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2

Spectroscopic Characterization of Chemical Compounds

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NMR spectra were recorded at 25 °C on either a 500 MHz Bruker Avance spectrometer, equipped with a triple resonance 5mm CPTCI cryo-probe or a 400 MHz Agilent Inova spectrometer equipped with a 5 mm OneNMR probe. NMR spectral processing and data interpretation was done using MestReNova software, version 8.0. Ultra-Performance Liquid Chromatography (UPLC) high resolution mass spectral (HRMS) data were acquired using on a Waters Acquity UPLC system coupled to a Waters LCT Premier TOF mass spectrometer with an electrospray ionization source. Preparative HPLC was run on a Waters Prep LC 4000 system, equipped with a Delta 600 pump and a 996-diode array detector, using a Phenomenex Kinetex C8 or C18 column [5 μ, 150 × 21.2 mm]. All solvents used for chromatography, UV, and MS were GC/LC-MS or HPLC grade, and the H2O for preparative HPLC was Millipore Milli-Q PF filtered.
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3

Covalent Modification of PAD4 by Inhibitors

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Example 18

Mass spectrometry was used to analyze covalent modification of protein by selected inhibitors. Recombinant human PAD4 was used at 4 mg/ml in 20 mM Tris pH7.6, 400 mM NaCl, 5 mM TCEP. Where applicable, buffer was supplemented with 5 mM CaCl2) to determine Calcium sensitivity of modification. Inhibitors were dissolved in DMSO at final concentrations of 0.2 mM to 5 mM and incubated with protein at 27° C. for 16 hours prior to analysis. Control experiments were performed with protein and DMSO in absence of inhibitor. Samples were centrifuged for 15 seconds at 10000 rpm at room temperature immediately prior to analysis using a Waters LCT-Premier TOF mass spectrometer, using a mobile phase from 5% to 80% acetonitrile in water supplemented by 0.1% formic acid.

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4

Mass Spectrometry Protocol for Accurate Measurements

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The MS detection was performed on an LCT Premier TOF mass spectrometer (Waters) equipped with an electrospray ionization (ESI) source and lock spray interface for accurate mass measurements with a MassLynx™ data analysis system (Waters). The scan range was from 100 m/z to 1,000 m/z. The MS source parameters were set as follows: capillary voltage, 2.7 kV; cone voltage, 40 V. The desolvation and source temperatures were set at 300°C and 110°C, respectively, and the nebulizer gas flow was set to 700 L/h. The lock spray was used for all analyses to ensure accuracy and reproducibility. A 1 μg/mL solution of leucine-enkephalin set to a flow rate of 10 μg/min was used as the lock mass. The lock mass attenuated ion (m/z 556.2771) was used in positive ionization mode. Systematic data acquisition was performed in positive centroid mode (i.e., W analyzer mode), the lock spray frequency was set at 5 s, and the lock-mass data was averaged over a 10 s scan for correction.
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