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15 protocols using liberase ci

1

Multicolor Flow Cytometry of Lung Cells

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BAL was obtained using 3 × 0.7 ml cold PBS supplemented with 2% FCS (Biowest, Kansas City, MO) and 1% EDTA. Lungs were digested with Liberase CI (Roche). Both BAL and lung ceHs were stained with allophycocyanin anti-mouse Ly-6G (BioLegend, San Diego, CA), PE rat anti-mouse Siglec-F (BD Pharmingen), PetCP/Cy5.5 anti-mouse CDllc (BioLegend), and anti-mouse CD3 eEluor 450 (eBioscience). This staining panel distinguished neutrophils (Ly-6G+CD11c) from eosinophils (Siglec-F+CD11c) and macrophages (Ly-6GCD11c+).
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2

Th2-polarized BT-II cell transfer and Blo t 5 challenge

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Th2-polarized BT-II cells (5 × 106 cells) were i.v. transferred into naive mice, and the next day 100μg recombinant Blo t 5 in 50μl sterile PBS was administered i.n. for three consecutive days. Mice were euthanized 1 d after the final challenge and blood, bronchoalveolar lavage (BAL), and lungs were harvested. Lungs were minced and digested in Liberase CI (Roche) at 37°C for 30 min and isolated over Ficoll-Paque (GE Healthcare Cleveland, OH).
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3

Lung Cell Isolation and Cytokine Assay

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Lungs were minced and digested using Liberase CI (0.5 mg/ml) (Roche Diagnostics, Indianapolis, IN) and DNase I (0.5 mg/ml) (Sigma, St. Louis, MO) and incubated at 37°C for 45 min. To make a single cell suspension, the remaining tissue was forced through a 70 µm cell strainer. Cells were cultured at 8.3 × 105/ml in 300 µl in flat-bottom 96-well plates, and stimulated with media or HDM at 30 µg/ml. Supernatants were harvested at 72 hours and cytokine levels were measured in (IL4, IL-5: Pharmingen) or R&D Systems (IL-13: Minneapolis, MN).
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4

CD4+ T Cell Activation Assay

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Spleen and LNs of DO11.10 mice were harvested, digested in RPMI-1640 medium (GIBCO, Paisley, UK) containing liberase CI (0.42 mg/ml (1.67 U/ml), Roche) and DNase 1 (0.2 mg/ml (400 U/ml), Roche) and passed through a 40 µm cell strainer (BD Biosciences). Single-cell suspensions were incubated for 20 min with anti-CD4+-coupled magnetic beads and isolated using a MACS column and separator (all from Miltenyi Biotech, Gladbach, Germany). Isolated CD4+ T cells (purity > 90%) were stained with 2 µM CFSE (Invitrogen) for 12 min at 37°. Subsequently, T cells were co-cultured for 3 days with FACS-sorted DCs, at a T cell:DC ratio of 5∶1, in presence of 100 µM OVA peptide (residues 323-339, GenScript, Piscataway, NJ, USA). Co-cultures were performed in RPMI-1640 medium (GIBCO) supplemented with 10% fetal bovine serum (FBS; GIBCO), 50 µM β-mercaptoethanol (Sigma), 15 mM HEPES (GIBCO), 1 mM Na-pyruvate (GIBCO), antibiotic/antimycotic solution (Fluka, Buchs, Switzerland) and 2 mM L-glutamine (Fluka).
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5

Pancreatic Islet Isolation Protocol

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Pancreatic islet isolation was performed using a modification of the semi-automated method previously described by Ricordi (27 (link)). The pancreas was digested using Liberase CI (Roche, Indianapolis, IN), mechanically disrupted and islets were purified by biocoll gradient centrifugation in a COBE 2991 cell processor (COBE, Lakewood, CO) (30 (link)). Purified islets were then cultured in CMRL 1066 (Mediatech, Herndon, VA) supplemented with 1% penicillin/streptomycin (Thermo Scientific, Waltham, MA), 10% FBS (Thermo Scientific) at 25°C in an incubator with 5% CO2 for 24 hours prior to assessment.
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6

Isolation and Flow Cytometry Analysis of Muscle-Resident Macrophages

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Single-cell suspensions of hind-limb muscles containing the femoral arteries, and paw tissues were generated by careful mincing tissues and subsequent digestion at 37°C for 1 hour in DMEM (Life Technologies) in the presence of 250 µg/ml liberase CI (Roche) plus 50 µg/ml DNase I (Roche). After filtration through a 40 µm nylon cell strainer (BD Biosciences) and centrifugation for 5 min at 400 g, the cells were washed and treated with ammonium-chloride-based erythrocyte lysis buffer. All flow cytometric measurements were performed in the buffer containing PBS with 2 mM EDTA and 2 % FBS (Life Technologies) on a Becton Dickinson LSRFortessa flow cytometer and were analyzed by FlowJo software (Treestar Inc.). Csf1r-EGFP positive and MF800 positive signals have been detected through FITC/Alexa Fluor488 (Excitation: 488 nm laser with 50 mW power; Emission: 530 ± 15 nm filter) and APC-Cy7/APC-H7 (Excitation: 640 nm laser with 40 mW power; Emission: 780 ± 30 nm filter) channels, respectively.
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7

Murine Lung Cell Isolation and HDM Restimulation

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Murine lungs were excised, minced, and digested in serum-free RPMI containing Liberase CI (0.5 mg/ml, Roche) and DNase I (0.5 mg/ml, Sigma) at 37 °C for 45 min. Cells were washed with RPMI containing 10% (v/v) FBS and viable cells were counted by trypan blue exclusion. For HDM-specific restimulation, whole lung cells were cultured at 250,000 cells per well of a 96-well plate (250 μl final volume) with HDM (30 μg/ml) and cell culture supernatants were harvested for cytokine measurements 72 h later.
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8

Isolation and Digestion of Murine Lungs

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Lungs were isolated and digested in an enzyme mixture of 6 mL of RPMI 1640 containing Liberase CI (0.5 mg/mL) (Roche Diagnostics, Indianapolis, IN, USA) and DNase I (0.5 mg/mL) (Sigma-Aldrich, St. Louis, MO, USA) for 45 min at 37 °C. The digested lung tissue was then homogenized with a 3-mL syringe plunger through a 70-μm cell strainer, and red blood cells were lysed with ACK lysis buffer (prepared in house).
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9

Isolation of Splenocytes via Density Gradient

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Spleens were injected with Liberase CI (Roche, Indianapolis, IN, USA) and incubated at 37C for 30 minutes, after which they were meshed through a 70-micron strainer and washed. The pellets were resuspended in 30% BSA in PBS, overlayed with PBS/0.1% BSA, and spun for 15 minutes at 9,500g at 4C. The low-density cells at the interface were collected, washed, and used for further analysis.
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10

Murine Treg and T conv Cell Isolation

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Anti–IL-2, anti-CD4, anti-CD11c, and anti-CD25 were purchased from eBioscience; and anti-I-A/I-E and anti-FOXP3 were purchased from BD. CFSE, CMF2HC, TAMRA, CellTrace Violet, and PMA (phorbol 12-myristate 13-acetate) were purchased from Invitrogen. The OVA323-339 peptide and ‘T4’ OT-I OVA257-264 (SIITFEKL) were synthesized by ChinaPeptides. Murine CD4+CD25+ T reg cell and CD4+CD25 T conv cells were isolated from spleens using mouse regulatory T cell isolation kit (STEMCELL Technology). Murine DCs were isolated with CD11c Microbeads (Miltenyi Biotec) from the spleen after digestion with 400 µg/ml liberase CI and 20 µg/ml DNase I for 30 min (Roche). OT-II/OT-I T cells were isolated using the CD4/CD8 T cell isolation kits (Miltenyi Biotec).
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