The largest database of trusted experimental protocols

16 protocols using ionomycin

1

Monitoring Calcium Flux in Parasites

Check if the same lab product or an alternative is used in the 5 most similar protocols
HFFs containing 215430-YFP expressing parasites grown on glass bottom dishes (Cellvis) were washed to remove extracellular parasites. The dish was then mounted on the imaging chamber of DeltaVision Core microscope (AppliedPrecision) preheated to 37° C for live imaging. Images were taken every 10 seconds for a total of 5 minutes and 2 μM ionomycin (Santa Cruz Biotechnology) was added after 2–4 time points were imaged. Movie was compiled in FIJI software.
+ Open protocol
+ Expand
2

Comprehensive Immune Cell Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
In order to analyze immune cells and their anti-tumoral activity, B6 mice were challenged and swarm at TT and BT (n=9 per group) and then 3 mice of them were randomly sacrificed every wk. Primary cells were collected from lymph node (LN), draining lymph node (dLN), and spleen, and analyzed via FACS Canto II or FACS Aria I. Data were analyzed using FlowJo version 10 (TreeStar, San Carlos, CA, USA). Antibodies with the following specificities were used for staining: CD8α (53-6.7), IFNγ (XMG1.2), IL-4 (11B11), CD44 (IM7), CD62L (MEL-14), NK1.1 (PK136), TCRβ (H57-597), and γδTCR (GL3) from BioLegend (San Jose, CA, USA); CD4 (GK1.5) from Thermo Fisher Scientific (Waltham, MA, USA); and IL-17 (TC11-18H10) from BD Biosciences (San Jose, CA, USA). Anti-mouse CD16/32 (2.4G2; BioLegend) blocked the non-specific binding of the antibodies. For intracellular cytokine staining, the cells were stimulated with PMA (Merck Millipore, Burlington, MA, USA) and ionomycin (Santa Cruz, Dallas, TX, USA) in the presence of brefeldin A (Thermo Fisher Scientific), which were then fixed and permeabilized with an IC fixation buffer (Thermo Fisher Scientific).
+ Open protocol
+ Expand
3

Intracellular Cytokine Staining Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ca2+-supplemented RPMI was obtained by adding 1.08 mM of CaCl2 to RPMI ([Ca2+final] = 1.5 mM). IMDM ([Ca2+] = 1.49 mM), RPMI (Life Technologies, [Ca2+] = 0.42 mM),, and Ca2+-supplemented RPMI ([Ca2+] = 1.50 mM) were supplemented with 10% FCS and contained 25 mM HEPES. For intracellular cytokine staining, 1–2 × 106 cells were restimulated with 10 ng/mL PMA (Sigma) and 1 μg/mL ionomycin (Santa Cruz) in the respective media at 5 × 106–1 × 107 cells/mL for a total of 4 h. After 1 h, brefeldin A (BioLegend) was added to a final concentration of 5 μg/mL. Following washing with PBS, cells were stained with a fixable live/dead staining (pacific orange succinimidyl ester, Life Technologies) for 20 min on ice. After 20 min fixation using the BD Cytofix/Cytoperm buffer, cells were washed with and stained in 0.5% w/v Saponin (Sigma) for 20 min on ice. A total of 1–2 × 105 cells were measured with a FACSCanto II (BD).
+ Open protocol
+ Expand
4

Quantifying Neuronal Calcium Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hippocampal neurons were transfected with Ca2+ indicators GCaMP6f or R‐GECO1, and mRFP or GFP to identify transfected neurons and presynaptic boutons. Field of views with axonal structures for all conditions were selected based on similar expression levels, while remaining blind for the expression levels of Ca2+ indicators. Duo‐color time‐lapses were acquired of 21 frames with 30‐s time interval, with a Z‐stack of three planes with 0.5‐μm interval for each frame, and cells were treated with 1–10 μM ionomycin (Santa Cruz, SC3592) prior to frame 13. Fluorescent intensities of GCaMPf or R‐GECO1 at single boutons were measured for the maximum intensity projections of each frame using a fixed ROI. Fluorescent values were corrected for background fluorescence and normalized to the maximum fluorescent intensity within seven frames after ionomycin treatment (F/Fmax). Relative basal Ca2+ levels were determined by the F0/Fmax ratio, where baseline values (F0) were obtained by averaging the fluorescent intensities of the five frames prior to ionomycin treatment.
+ Open protocol
+ Expand
5

Platelet-Derived Microparticle Generation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Blood was collected from 4 female healthy donors (age 26–33 years) as described above, and platelets were isolated as previously described [47 (link)]. In brief, citrated blood was centrifuged at 120xg for 20 min at 20°C to obtain platelet-rich plasma (PRP). Platelets were isolated from PRP by centrifugation at 3,000xg for 2 min at 20°C in the presence of prostacyclin (PGI2, 1 μM, Sigma-Aldrich, Austria), followed by repeated washing in sterile filtered (0.1 μm) phosphate-buffered saline (PBS: 133 mM NaCl, 1.3 mM KCl, 2.5 mM Na2HPO4x2H2O, 0.5 mM KH2PO4, pH = 7.4).
MP generation was induced by addition of thrombin receptor activating peptide-6 (TRAP–6, 20 μM, AnaSpec, Belgium) or ionomycin (40 μM, Santa Cruz Biotechnology, Inc., Germany) in the presence and absence of pPCI (300 nM) to isolated platelets (300,000/μl) in PBS. After 20 min of stimulation platelets were centrifuged at 3,000xg for 5 min to obtain MP containing platelet-free supernatant.
+ Open protocol
+ Expand
6

Analyzing NK Cell Cytokine Production

Check if the same lab product or an alternative is used in the 5 most similar protocols
Purified NKG2D+NK cells from eight HCC patients and eight HD were sorted by flow cytometry (BD, FACSAriaII) and stimulated with PMA (25 ng/mL) (Sigma-Aldrich, P1585) and Ionomycin (1 μg/mL) (Santa Cruz Biotechnology, 56092-82-1) at 37°C for 1 h. Then, Pecy5-CD107a (BD Biosciences, 555802), GolgiStop (BD Biosciences, 554715) and Brefedlin A (Santa Cruz Biotechnology, sc-200861) were added into the medium. After 5 h, cells were collected and stained with the following monoclonal surface Abs, eFluor®450-CD3 (eBioscience, 48-0038-42), PE-CD14 (BD Biosciences, 555398), Pecy7-CD56 (BD Biosciences, 335791), APC-NKG2D (BD Biosciences, 558071). Then, cells were intracellularly stained with Alexa Fluor® 700-IFNγ (BD Biosciences, 557995) and FITC-TNF-α (BD Biosciences, 554512) and detected by flow cytometry.
+ Open protocol
+ Expand
7

Cell Culture Techniques for NIH3T3 and MCF10A

Check if the same lab product or an alternative is used in the 5 most similar protocols
NIH3T3 cells were cultured in DMEM high‐glucose medium with 5% fetal bovine serum, 4 mM l‐glutamine, 200 U/ml penicillin and 200 µg/ml streptomycin at 37°C with 5% CO2. All imaging experiments with NIH3T3 were done in starving medium consisting of DMEM high glucose supplemented with 0.5% BSA (Sigma), 200 U/ml penicillin, 200 μg/ml streptomycin and 4 mM l‐Glutamine. MCF10A human mammary cells were cultured in DMEM:F12 supplemented with 5% horse serum, 20 ng/ml recombinant human EGF (Peprotech), 10 μg/ml insulin (Sigma), 0.5 μg/ml hydrocortisone (Sigma), 200 U/ml penicillin, and 200 μg/ml streptomycin. All imaging experiments with MCF10A were done in starving medium consisting in DMEM:F12 supplemented with 0.3% BSA, 0.5 μg/ml hydrocortisone, 200 U/ml penicillin, and 200 μg/ml streptomycin. For growth factor stimulations, we used human EGF (AF‐100, Peprotech) and human basic FGF (F0291, Sigma). Chemical perturbations were done with SU‐5402 (SML0443, Sigma), RAF709 (HY‐100510, Lucerna‐Chem), U0126 (S1102, Selleck chemicals, Lubio), SCH772984 (HY‐50846, Lucerna‐Chem), SL0101 (559285, Sigma), Cyclosporine A (10‐1119, Lucerna‐Chem), and Ionomycin (sc‐3592, Santa Cruz). Selection of the cells post transfection was done using Puromycin (P7255, Sigma), Blasticidin S HCI (5502, Tocris), and Hygromycin B (sc‐29067, Lab Force).
+ Open protocol
+ Expand
8

Intracellular Calcium Signaling in DAOY Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
To determine intracellular Ca2+-concentrations, DAOY cells were seeded on cover slips, mounted in a cell chamber and perfused as described in the section “Whole-cell patch clamp”. Fluorescence was measured every 2 s on an inverted microscope (IX71, Olympus, Chromaphor) using a Fluar 20 × /0.75 objective (Olympus) and Till Vision real-time imaging software (Till Photonics). Cells were loaded for 30 min at 37 °C with 2 μM Fura-2-AM (Molecular Probes) in the bath solution. Fura-2 was excited at 340/380 nm and the emission was recorded between 470 and 550 nm using a sensicam CCD camera (PCO imaging). Acquisition and data analysis were done using the Till Vision software and Excel.
The bath solutions used for the capsaicin, menthol, ATP and ionomycin stimulations consisted of the conditioning bath solution described under “Whole-cell patch clamp” containing the following chemicals: 100 μM capsaicin (Sigma Aldrich), 200 μM menthol (Sigma Aldrich), 100 μM ATP (Sigma Aldrich), or 1 μM ionomycin (Santa Cruz Biotechnology, Dallas, USA), respectively. The 30 mM K+ solution contained the following compounds (in mM): NaCl 85, KCl 30, D-glucose 5, HEPES 5, glucose 5.5, MgCl2 1, sodium gluconate 25, calcium gluconate 3. pH was adjusted to 7.4 with NAOH and HCl. The pH 6.0 solution consisted of the acidic bath solution described in “Whole-cell patch clamp”.
+ Open protocol
+ Expand
9

Apoptosis and Oxidative Stress Assays

Check if the same lab product or an alternative is used in the 5 most similar protocols
Glucose oxidase, Cyclosporine A, Sanglifehrin A, DCFH-DA, DAPI, calcein-AM and Rhodamine-123 were purchased from the Sigma Chemical Corp (St. Louis, USA). The molecular probes including MitoSOX™, Mito-Tracker-Red/Green were obtained from Invitrogen Corporation. (Carlsbad, USA). The Malondialdehyde assay kits were purchased from Beyotime Institute of Biotechnology (Nanjing, CHINA). The Annexin V-FITC/Propidium iodide apoptosis kit, TUNEL apoptosis detection kit, Mitochondria Fractionation Kit, and Nucleus Fractionation Kit was purchased from the Roche (Cambridge, USA). GAPDH, COX IV, Bax, Bcl-2, cytochrome C antibodies, Pifithrin-α, Pifithrin-μ and ionomycin were obtained from Santa Cruz Biotechnology (Santa Cruz, USA). P53 antibodies, Goat anti-Rabbit IgG-FITC, and Goat anti-Rabbit IgG-(H+L)-HRP were purchased from the abcam (Cambridge, USA). Caspase-9 and Caspase-3 Colorimetric Assay Kit was obtained from Keygen (Nanjing, China). All other chemicals and solvents were of analytical grade with highest purity commercially available.
+ Open protocol
+ Expand
10

Foxp3 Promoter Luciferase Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Reporter assays were performed as previously described60 (link). The Foxp3 promoter (−422- +20, position at Exon1) was cloned into the pGL4.10 Luciferase reporter plasmid (Promega, catalogue number: E6651). The TK-Renilla reporter plasmid (Promega, catalogue number: E2241) was used as a control. Treg cells, polarized for 42 h as described above and expanded for 1 day were transfected with different Luciferase reporter and control Renilla reporter constructs by using the Mouse T Cell Nucleofector Kit (LONZA, catalogue number: V4XP-3032) according to the manufacturer's instructions. Sixteen hours after electroporation, T cells were re-stimulated for 6 h with PMA (25 ng ml−1, Santa Cruz) and Ionomycin (1 μg ml−1, Santa Cruz) and then harvested and measured with the Dual Luciferase reporter system (Promega, catalogue number: E1910). Renilla activity was used to normalize transfection efficiency and Luciferase activity.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!