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3 protocols using af3013

1

Quantification of Protein Expression in Lung Tissues

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Lung tissues were homogenized and protein was isolated using the RIPA lysis solution (P0013B, Beyotime, Shanghai, China). Protein concentration was determined with a Bradford protein assay kit (P0009, Beyotime). A total of 15–30 µg protein per lane was separated on 10% SDS polyacrylamide gel and transferred onto a polyvinylidene fluoride membrane (Thermo Fisher Scientific, Waltham, MA, USA). Following blocking in TBST (TBS with 0.1% Tween-20) for 1 h, the membrane was incubated with anti-S1PR1 (1:500; A12935, ABclonal, Wuhan, China), anti-nuclear factor kappa-B (NF-κB) ligand p65 (1:1,000; A19653, ABclonal), anti-phospho-inhibitor of NF-κB (p-IκB)-α (Ser32/36; 1:500; AF2002, Affinity Biosciences, Changzhou, China), anti-IκB-α (1:1,000; AF5002, Affinity), anti-p-IκB kinase (IKK; Ser180/Ser181; 1:500; AF3013, Affinity, China), anti-IKK (1:1,000; AF6014, Affinity) and anti-Histone H3 (1:500; 17168-1-AP, Proteintech, Wuhan, China), and anti-β-actin (1:2,000; 60008-1-Ig, Proteintech) antibodies at 4°C overnight. Membranes were incubated with the secondary antibodies at 37°C for 40 min. The relative intensity of proteins was visualized using electrochemiluminescence reagents (Shanghai 7sea biotech Co., Ltd.) and quantified using Gel-Pro Analyzer 4.0 (Media Cybernetics, Rockville, MD, USA).
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2

Western Blot Analysis of Osteoblast Markers

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The total proteins of MC3T3-E1 cells or BMSCs were extracted and lysed with RIPA buffer (Beyotime, China), and protein concentration was detected using a BCA protein assay kit (Solarbio, China). Then, a 20 μg total protein sample was loaded onto 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) for separation and transferred to a PVDF membrane. After being blocked with 5% skimmed milk, the membrane was incubated at 37°C with the primary antibodies against caspase-3 (ab13847, Abcam), caspase-9 (ab32539, Abcam), SIRT1 (ab110304, Abcam), BMP-2 (ab214821, Abcam), RANKL (ab45039, Abcam), OPG (ab73400, Abcam), IκBα (ab32518, Abcam), p-IκBα (AF2002, Affinity), p65 (ab207297, Abcam), p-p65 (AF2006, Affinity), IKKα (ab32041, Abcam), p-IKKα (AF3013, Affinity), NFATc1 (ab2796, Abcam), and cathepsin K (ab19027, Abcam) at 4°C overnight. After that, the membrane was further incubated with the secondary antibody at room temperature for 1 h. Then, the enhanced chemiluminescence (ECL) reagent (Solarbio, China) was used to visualize the protein bands, and the relative band density was semiquantified with the ImageJ software.
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3

Investigating Necroptosis Signaling Pathways

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The following commercial antibodies and reagents were used: Necrostatin-1 (S8037, Selleck); Necrostatin 1S (S8641, Selleck); Z-VAD-FMK (S0723, Selleck); TPCA-1(S2824, Selleck); PH-797804 (S2726, Selleck); SP600125 (S1460, Selleck); C-176 (S6575, Selleck); QNZ (S4902, Selleck); RIPK1 (1:1000, 551041, BD Biosciences); RIPK3 (1:1000, NBP1-77299, NOVUS); MLKL (1:2000, AP14272B, Abcepta); pMLKL (1:1000, 37333S, Cell Signaling Technology); Flag (1:1000, 20543-1-AP, Proteintech); caspase3 (1:1000, 19677-1-AP, Proteintech); HMGB1 (1:1000, 10829-1-AP, Proteintech); p65 (1:1000, 66535-1-Ig, Proteintech); GAPDH (1:10,000, 60004-1-Ig, Proteintech); Histone H3 (1:1000, 17168-1-AP, Proteintech);IL6 (1:1000, 66146-1-Ig, Proteintech); CD68 (1:1000, 28058-1-AP, Proteintech); TMEM119 (1:1000, 27585-1-AP, Proteintech); p-p65 (1:200, sc-136548, Santa Cruz); IKK (1:500, AF6009, Affinity); p-IKK (1:500, AF3013, Affinity); IKbα (1:1000, 10268-1-AP, Proteintech); p-IKbα (1:500, AF2002, Affinity); Ccl5 (1:500, AF5151, Affinity); IFNb1 (1:500, DF6471, Affinity); pTau396 (1:1000, 829,001, Biolegend); AT8 (1:1000, MN1020, Thermo); Goat Anti-Mouse-HRP IgG (1:10,000, 115-035-003, Jackson ImmunoResearch); Goat Anti-Rabbit-TRITC IgG (1:200, 111-025-045, Jackson ImmunoResearch); Goat Anti-Rabbit-HRP IgG (1:10,000, 111-005-003, Jackson ImmunoResearch).
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