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6 protocols using bix02189

1

Inhibiting Autophagy and MEK Signaling

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Unless otherwise stated, cells were treated with 10 µM BIX02189 (Tocris 4842) and 10 µM XMD8–92 (Tocris 4132) for 16 h and with 50 nM Bafilomycin A1 (Sigma B1793) for 2 h.
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2

Keratinocyte Culture and Inhibitor Assays

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Normal human keratinocytes (NHKs) were established from healthy adults as previously described(60 (link)) and grown in medium 154 CF (Thermofisher M154CF500) with human keratinocyte growth supplement (Thermofisher S0015). Inhibitors used included the MEK1/2 inhibitor PD98059 (Tocris 1213), the MEK5 inhibitor Bix02189 (Tocris 4842) and the IκBα phosphorylation inhibitor Bay 11–7085 (Tocris 1743) according to the manufecturer’s specifications. siRNA was introduced by electroporation using Lonza 4D-nucleofector following manufacturer’s instructions. Cytokine stimulations were performed as previously reported(61 (link)). qRT-PCR was performed on a 7900HT Fast Real-time PCR system (Applied Biosystems) with TaqMan Universal PCR Master Mix (ThermoFisher 4304437).
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3

Pharmacological Inhibition of Oncogenic Signaling

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Pharmacological inhibitors to MEK1/2 (Trametinib/GSK1120212, MEKi), HDAC (Panobinostat/LBH589, HDACi) and WEE1 (Adavosertib/MK-1775, WEE1i) were acquired from Selleckchem; to MEK5-K2 (BIX02189, MEK5i) was purchased from Tocris. Lestaurtinib/L6307 (mtPKCi), Neratinib (pan-HERi) and Afatinib (EGFRi) were obtained from LC Laboratories, and Midostaurin/PKC412 (mtPKCi), Sotorasib/AMG-510 (KRASi), Darovasertib (PKCAi), Barasertib (AURKBi), Adagrasib/MRTX849 (KRASi) and MG132 (proteasome inhibitor) were purchased from MedChemExpress. Dabrafenib (RAFi) was a kind gift from Imanol Arozarena (Navarrabiomed, Spain).
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4

Functional Genomics Screening of FOSL1, AURKA, TACC3

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shRNAs to FOSL1: sh1–TRCN0000019541, sh2–TRCN0000019543, sh3–TRCN0000019539. FOSL1 sh1 was also cloned into a TET inducible version of pLKO.1 vector52 (link). shRNAs to Fosl1: sh1-TRCN0000042683, sh2-TRCN0000042686. shRNAs to AURKA: sh1–TRCN0000000656, sh2–TRCN0000000657. shRNAs to TACC3: sh1–TRCN0000290485, sh2–TRCN0000308273. Control shRNA to green fluorescence protein (GFP) has been previously described15 (link). pDONR223-AURKA was a gift from William Hahn & David Root (Addgene plasmid # 23532). Pharmacological inhibitors: U0126, SP600125, LY294002 and SB203850 were from Sigma; BIX02189 was from Tocris; trametinib and alisertib were from Selleckchem.
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5

Macrophage Inhibitors Pretreatment Protocol

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In some experiments, macrophages were pretreated with the following inhibitors: BIX 02189 (Tocris), a selective inhibitor of MEK5; XMD 8-92 (Tocris), an inhibitor of ERK5; and 10058-F4 (Tocris), a c-Myc-Max dimerization inhibitor.
Optimal doses of inhibitors were determined for each experiment. Mock pretreatment was performed with vehicle alone (DMSO) at a maximum concentration of 0.05%.
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6

Recombinant Growth Factor Acquisition

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Recombinant human vascular endothelial growth factor (VEGF)-A165 was purchased from R&D Systems Inc. (Abingdon, UK). Recombinant human epidermal growth factor (EGF) was purchased from Peprotech (London, UK). BIX02189, AX15836 and BIRB796 were purchased from Tocris Bioscience (Bristol, UK), and JWG071 was purchased from Sigma (Poole, UK).
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