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Irdye 680rd series

Manufactured by LI COR

The IRDye 680RD Series is a near-infrared fluorescent dye designed for use in a variety of biological applications. It has a maximum excitation wavelength of 680 nm and a maximum emission wavelength of 700 nm, making it suitable for detection in the near-infrared region of the spectrum.

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2 protocols using irdye 680rd series

1

Western Blot Protein Detection Protocol

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Cells were lysed at 4°C in RIPA buffer (50 mM Tris, pH 8, 1% Triton, 150 mM NaCl, 0.5% SDS, 50 mM Triton, 1 mM EDTA) + Protease Inhibitor Cocktail (Roche, 11697498001), sonicated for 15 s, clarified via centrifugation, and stored in –80°C. Lysates were solubilized by mixing 1:1 in loading buffer (10% SDS, 40% glycerol, 3% Bromophenyl Blue, and 10% Beta-Mercaptoethanol). Proteins in lysates with loading buffer were first denatured by boiling for 5 min and cooled on ice for 2 min before being loaded into 10% polyacrylamide gels and run for ∼90 min at 125V. Resolved proteins were transferred onto nitrocellulose membranes for 1 h at 100V. Membranes were then blocked with 5% bovine serum albumin (BSA) for an hour before incubation with primary antibody, washed three times in PBST (2.0% Triton in phosphate-buffered saline [PBS]), and then finally incubated with secondary antibodies (Licor, IRDye 680RD Series, CW800 Series). Bands were visualized using a LI-COR Odyssey FC system. Primary antibodies used were Dsg1 (BD Bioscience, 610273), Desmoplakin (Millipore Sigma, MABT1492), E-cadherin (Invitrogen, 13-1900), GST (Bethyl Laboratories, A190-122P), HA tag (Roche, 11867423001), Occludin (Thermo Fisher, 71-1500), Plakoglobin (Santa Cruz, sc-7900), and Streptavidin-HRP (Thermo Fisher, 43-4323).
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2

Epidermal Protein Extraction and Western Blot

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Skin epidermal samples were prepared as previous described (Sumigray et al., 2012 (link)). Epidermal proteins from control and K10-Spastin were solubilized in loading buffer (10% SDS, 40% Glycerol, 3% Bromophenyl Blue, and 10% β-mercaptoethanol), boiled for 10 minutes and loaded into 10% polyacrylamide gels and run for ~90 mins at 120V, then transferred onto nitrocellulose membrane, blocked with 5% BSA, and immunoblotted with primary antibodies for Myosin IIC (Biolegend, 919201) and GAPDH (Abcam, ab9485) overnight. Blots were washed three times in PBST (0.1% Tween in PBS), incubated with secondary antibodies (Licor, IRDye 680RD Series, CW800 Series), then visualized using a LI-COR Odyssey FC system.
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