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8 protocols using hyclone fetal calf serum

1

Utilizing Jurkat-Derived 2H4 Reporter Cell Line

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We used the previously established 2H4 reporter cell line derived from a specific cell line of Jurkat cells with the ability to produce IL-2, kindly provided by Professor Kazuo Sugamura, Department of Microbiology, Tohoku University School of Medicine. 2H4 cells contain SLG regulated by the IL-2 promoter, SLO regulated by the IFN-γ promoter, and SLR regulated by the G3PDH promoter (Saito et al., 2011 (link)). This cell line was cultured in RPMI-1640 (Sigma-Aldrich, St. Louis, MO) containing Antibiotic-Antimycotic (Invitrogen) and 10% Hyclone™ fetal calf serum (Thermo Fisher Scientific, Waltham, MA) (Jurkat growth medium) at 37 °C with 5% CO2.
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2

Osteosarcoma Cell Lines and Cancer Stem Cells

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The UMR-106 (UMR) cell line corresponds to an osteogenic sarcoma induced in a rat by serial injections of 32P [40 (link)]. The MNNG/HOS (MN) cell line was derived from an osteosarcoma tumor present in a 13 year-old caucasian female. The cells were then treated with a carcinogenic nitrosamine [41 (link)]. The UMR and the MN cell lines were maintained in Dulbecco’s modified Eagle medium (DMEM, Lonza, Levallois-Perret, France) and DMEM-F12 (Sigma-Aldrich, St Quentin Fallavier, France) respectively, supplemented with 10% Hyclone fetal calf serum (Thermo Scientific, Villebon sur Yvette, France). Populations enriched in CSCs were cultured in ultra-low attachment flasks (Corning, Fisher Scientific, Illkirch, France) in DMEM-F12 methylcellulose 1% supplemented with 10 ng/mL basic fibroblast growth factor (bFGF), 20 ng/mL epidermal growth factor (EGF) (Peprotech, Neuilly sur Seine, France) and N2 supplement (Invitrogen, Fisher Scientific). Sphere dissociation for cell dilution was performed each week upon incubation with Accumax (Sigma-Aldrich), a mix of mild proteases, at 37°C for 10 min. The spheres were transferred at least five times before use and were dissociated two days before each experiment in order to obtain small spheres enriched in CSCs.
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3

Mammalian Cell Culture and Transfection

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Mammalian cells were cultured in medium supplemented with 10% HyClone fetal calf serum (FCS; Thermo Scientific) and 2 mM L-glutamine at 37°C under 5% CO2. HeLa and HeLa M cells were grown in Dulbecco's modified Eagle's medium (DMEM), and hTERT-RPE1 cells were grown in DMEM with Ham's F12 (1∶1) supplemented with 10 µg/ml hygromycin B (Invitrogen). Transient transfection of plasmid DNA was performed using 1 mg/ml linear polyethylenimine (PEI, Sigma-Aldrich) by forming complexes of DNA–PEI at a ratio of 1∶3, and cells were typically assayed 24 h post-transfection. For siRNA transfections, ∼4.5×104 cells were seeded in 3.5-cm dishes for 24 h, transfected with 20 nM siRNA duplexes using INTERFERin (Polyplus Transfection) as specified by the manufacturer, and analyzed 72 h post-transfection. For siRNA transfections, ∼4.5×104 cells were seeded in 3.5-cm dishes 24 h before transfection with 20 nM siRNA duplexes using INTERFERin (Polyplus Transfection) as specified by the manufacturer. Cells were typically assayed 72 h after transfection. For the siRNA rescue experiments, cells were sequentially transfected with GMAP-210 or control siRNA, and 48 h later with DNA encoding siRNA-resistant full-length GMAP-210–Myc or HRD1–Myc. Cells were incubated for additional 24 h, and then they were trypsinised, re-seeded onto coverslips, and assayed after another 24 h.
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4

Immunostaining of Murine Embryonic Fibroblasts

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Mouse embryonic fibroblasts were plated onto collagen-coated glass coverslips and cultured overnight to 80% confluency in DMEM high glucose, GlutaMAX, with pyruvate (Thermofisher), supplemented with 15% hyclone fetal calf serum (Thermofisher). Cultures were fixed for 10 min at room temperature with 4% paraformaldehyde in 1 X PBS and washed three times with 1 X PBS. Cells were then blocked for 1 h with 10% normal donkey serum diluted in 1 X PBS also containing 0.25% TritonX-100, followed by overnight incubation at 4°C with Monoclonal Antibody 414 (Mab414; AbCam ab24609) diluted 1:50 in the same solution. The following day coverslips were briefly rinsed in 1 X PBS, washed 3 x 10 min with 1 X PBS, and then incubated for 1 h at room temperature with Alexa Fluor 488 anti-mouse (Jackson Immunoresearch) in the 10% normal donkey serum solution. A second set of washes were applied and then coverslips were inverted and mounted onto slides with Vectashield containing DAPI (Vector Laboratories). For imaging a Nikon (Tokyo, Japan) C2 confocal scanhead attached to a Nikon TiE inverted microscope outfitted with a APO 60x 1.4 NA oil objective lens was used. Images of different genotypes were processed identically using ImageJ and Photoshop.
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5

Culturing Primary Human Epidermal Keratinocytes and THP-1 Cells

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Primary neonatal human epidermal keratinocytes (NHEKs) was purchased from ThermoFisher Scientific. NHEKs were grown in serum free EpiLife medium supplemented with 0.06 mM CaCl2, EpiLife Defined growth supplements (EDGS) (ThermoFisher Scientific) and antibiotics, and passage 3–5 cells were used for experiment. Cells at 60–80% confluence were starved overnight without EDGS prior to treatment. THP1 was purchased from American Type Culture Collection (ATCC) (Manassas, VA). THP1 was cultured in RPMI-1640 (Sigma) supplemented with 10% Hyclone fetal calf serum (Thermofisher Scientific), and antibiotics, and passage 3–5 cells were used for experiment. Cells at 60–80% confluence were differentiated by Phorbol 12-myristate 13-acetate (PMA, Sigma) for 24 hours and then starved overnight without Hyclone fetal calf serum prior to treatment.
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6

Tigecycline Sensitivity Assay

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Tigecycline powder was obtained from Sequoia Research Products (Pangbourne, United Kingdom). Oxyrase was purchased from Oxyrase, Inc. (Mansfield, OH). Hyclone fetal calf serum was from Thermo Fisher Scientific (Rockford, IL). Interleukin 3 (IL-3) and stem cell factor (SCF) were from R&D Systems (Burlington, ON, Canada), and L-glutamine was from Life Technologies (Burlington, ON, Canada). Mueller Hinton Broth was obtained from BD (Franklin Lakes, NJ), Iscove's modified Dulbecco's medium (IMDM) was prepared from powder (Cat # 12200, Invitrogen (Burlington, ON, Canada)) at the Ontario Cancer Institute Tissue Culture Media Facility (Toronto, ON, Canada). All other reagents were purchased from Sigma unless otherwise noted.
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7

Utilizing Jurkat-Derived 2H4 Reporter Cell Line

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We used the previously established 2H4 reporter cell line derived from a specific cell line of Jurkat cells with the ability to produce IL-2, kindly provided by Professor Kazuo Sugamura, Department of Microbiology, Tohoku University School of Medicine. 2H4 cells contain SLG regulated by the IL-2 promoter, SLO regulated by the IFN-γ promoter, and SLR regulated by the G3PDH promoter (Saito et al., 2011 (link)). This cell line was cultured in RPMI-1640 (Sigma-Aldrich, St. Louis, MO) containing Antibiotic-Antimycotic (Invitrogen) and 10% Hyclone™ fetal calf serum (Thermo Fisher Scientific, Waltham, MA) (Jurkat growth medium) at 37 °C with 5% CO2.
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8

Flow Cytometric Analysis of T Cell Activation

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T cell populations were analyzed by flow cytometry. In short, single-cell suspensions of splenocytes were plated at a concentration of 2×106 cells in a 48-well plate in RPMI medium (Life Technologies) with 10% Hyclone fetal calf serum (FCS, Thermo Scientific), and stimulated overnight with either medium, 50 ng peptide or 50 ng PR8 WIV. Cytokine transport was blocked by incubating with Golgi-plug (BD Biosciences) for the last 4 h. Cells were stained with anti-mouse CD8-FITC (BD Biosciences), anti-mouse CD4-PE (BD Biosciences), and Live-dead-Aqua (Invitrogen), fixated with fixation/permeabilization buffer (BD Biosciences), and washed with permeabilization wash buffer (BD Biosciences). Finally, cells were stained intracellularly with anti-mouse IFN-γ-APC (BD Biosciences), and IFN-γ+ CD8+ T cells were quantified on a FACS Canto II flow cytometer (BD Biosciences). Acquired data were analyzed with FlowJo version 10 for Mac OSX (TreeStar Inc.). Gating strategy for the quantification of CD8+ IFN-γ+ T cells is shown in Figure S2 in Supplementary Material.
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