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12 protocols using gm6001

1

Isolation of Myotubes from C2C12 and L6 Cells

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The mouse C2C12 (ATCC CRL-1772) and rat L6 (ATCC CRL-1458) myoblast cells were cultured as previously described [11 (link)]. Briefly, cells were passaged in DMEM (Corning 10-013-CV) supplemented with 10% FBS, 1 × GlutaMAX (ThermoFisher 35,050) and 1 × antibiotic–antimycotic (ThermoFisher 15,240). Cells were grown to confluence and induced to differentiate in DMEM without sodium pyruvate (Corning 10-017-CV) supplemented with 2% horse serum. Myotubes were isolated from the non-differentiated reserve cells using diluted trypsin. The cell permeable inhibitors E64 (25 μM, Selleckchem S7379), GM6001 (25 μM, Selleckchem S7157), MMP-9i (100 nM, Selleckchem S0769) and rapamycin (20 nM, Selleckchem, S1039) in DMSO were added to the media 1 day prior to and following media replacement.
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2

Phospho-RTK Array for Signaling Pathways

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The human Phospho-RTK Array Kit was obtained from R&D Systems. Phosphorylserine (OPS), sphingomyelin, and ADAM10 inhibitor (GI254023X) were from Sigma-Aldrich. Erlotinib Hydrochloride, a broad spectrum matrix metalloprotease (MMP) inhibitor GM6001, and ADAM17 inhibitor TAPI-1 were from Selleck. ADAM17/10 inhibitor (GW280264X) was from TargetMoI. EGFR-blocking antibody Cetuximab, ceramidase inhibitor Ceranib1, and ceramide kinase inhibitor NVP231 were from MCE. Annexin V-FITC from BD Bioscience. Anti-GAPDH, anti-EGFR, anti-phosphoEGFR, anti-ERK1/2, anti-phosphoERK1/2, and anti-TACE (ADAM17) were from Cell Signaling Technology (1:1,000). Goat anti-rabbit IgG-HRP and goat anti-mouse IgG-HRP were from Thermo Fisher Scientific (1:4,000). Blocking and neutralizing antibodies against human epiregulin, HB-EGF, and TGF-α antibodies were from R&D Systems (0.8 µg/mL). Additional antibodies used for flow cytometry were as follows: Brilliant Violet 605 anti-mouse CD11c (N418), FITC anti-mouse CD45 (30-F1), PerCP/Cyanine5.5 anti-mouse Ly-6G/Ly-6C (Gr-1) (RB6-8C5), PE anti-mouse F4/80 (BM8), and APC-anti-mouse/human. CD11b (M1/70) was from Biolegend (1:100).
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3

Collagen-Dependent Cell Invasion Assay

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Human and murine cSCC cells were seeded onto cell culture inserts (Fisher Scientific) at 25,000 cells per insert containing either 0.3 μg/mL bovine Type I collagen solution (Advanced Biomatrix) or 0.3 μg/mL bovine Type II collagen solution (Southern Biotech). Type I and Type II collagen gel matrices were prepared as per Manufacturer protocol. Invasion chambers were incubated for 24 hours following cell seeding. After which, membranes were removed, fixed in 4% PFA, and stained with DAPI. Cells were visualized by DAPI fluorescence using a Zeiss LSM 5 Exciter confocal microscope and the number of invasive cells on five randomly chosen fields of view per insert were counted. The average number of cells per membrane was statistically compared using the Student’s t-test between groups (N = 3 inserts/group). In some cases, culture media was supplemented with 10 μM of the broad spectrum MMP inhibitor GM6001 (Selleckchem) or 10 μM of the CTSK inhibitor MK-0822 (Selleckchem).
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4

3D Invasion Assay of RC6 Spheroids

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RC6 spheroids were generated using the hanging drop method with methylcellulose, as previously described [17 (link)]. For 3D invasion assay, 25 μl of spheroids was embedded in hydrogel mixture (17.85 μl collagen type I; 0.45 μl 1 M NaOH; 5 μl 5x DMEM; 1.7 μl dH2O), placed on top of 50 μl of hydrogel, and treated with 10 μM CoQ10, 250 μM TMZ, their combination, or 50 μM GM6001 (Selleckchem, TX, USA). Control without treatment was included. After 24 h, spheroids were stained with CAM (1 : 1000) and PI (1 : 500) in order to visualize spheroids and test viability. Images of spheroids were taken using a Nikon Eclipse Ti microscope equipped with a C1 modular confocal microscope system, at 20x magnification. The size of spheroids was analyzed using Fiji® software. At least 10 spheroids were analyzed per experiment.
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5

Modulating Membrane-Bound and Soluble MSLN

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Nomo-1 and Kasumi-1 cell lines were obtained from ATCC and maintained per manufacturer's instructions. We engineered Kasumi-1 MSLN+ cell line by transducing Kasumi-1 cells with a lentivirus containing the MSLN transgene driven by the EF1a promoter (see ref. 7 (link)). Jurkat Nur77 reporter cells were maintained in RPMI supplemented with 20% FBS and 2 mmol/L l-Glutamine.
GM6001 (Selleckchem, catalog no. S7157) is a matrix metalloprotease inhibitor. It is stable in vitro, but its half-life of in vivo is reported to be <15 minutes (ref. 14 (link); and see details at GM6001-MMP-Inhibitor,MM_NF-CC1010" xlink:show="new">https://www.emdmillipore.com/US/en/product/GM6001-MMP-Inhibitor,MM_NF-CC1010). Nomo-1 cells were treated with GM6001 (50 μmol/L) or DMSO control for 48 hours prior to evaluation of surface MSLN by flow cytometry; of soluble MSLN in the culture supernatant by ELISA; and of cell lysis activity by coculture with MSLN CAR T cells. For in vitro cytotoxicity assay, fresh GM6001 (50 μmol/L) or DMSO was added to the coculture of Nomo-1 and CAR T cells. For in vivo assays, mice were treated with GM6001 at 100 mg/kg once a day for 3–7 days via intraperitoneal injection.
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6

Evaluating Ephrin-A1 Secretion in Hypoxic OSCC

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Block assay was carried out to evaluate the function of MMPs in hypoxia-induced OSCC cells secretion of ephrin-A1 in vitro. A specific inhibitor, GM6001 (Selleck Chemicals, US, 100μM), was added in the culture medium to block MMPs. The control groups were cultured in the absence of the inhibitor.
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7

Inhibition of TIMP-1 and Wnt7a Signaling

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All peptides used were purchased from commercial sources. These included full length recombinant murine (rm)-TIMP-1 (10 ng/mL; R&D Systems), C-terminal domain of TIMP-1 (amino acids 126–184 of TIMP-1, referred to as “TIMP-1(C)”; 100 ng/mL, Anaspec), and Wnt7a (50 ng/mL; R&D Systems). Function Blocking Antibodies. anti-β1 integrin (5 μM; Ha2/5, BD Pharmingen) and its serotype matched hamster IgM2 control (Sigma), and anti-CD63 (5μM; Santa Cruz) and its serotype matched IgG control (Santa Cruz). Chemical Inhibitors used included the broad spectrum MMP inhibitor, GM6001 (12.5 μM; Selleckchem), and the Akt inhibitor, MK-2206 (5 μM; Selleckchem).
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8

Pharmacological Inhibitor Assay Protocol

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G-749, MG132, z-VAD-FMK, GM6001 and Necrostatin-1 were purchased from Selleckchem (Houston, TX, United States). Hydroxypropyl-β-cyclodextrin, cycloheximide, crystal violet and chloroquine were purchased from Sigma Chemical Co. (St. Louis, MO, United States). Compound E was purchased from MedChemExpress (Monmouth Junction, NJ, United States). The antibodies used in this study are shown in Supplementary Table S1.
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9

Osteoclast Differentiation from Human Monocytes

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Peripheral blood mononuclear cells were isolated from human leucocyte cones (NHS Blood and Transplant, Bristol, UK; anonymous donors) by density gradient centrifugation. CD14 + monocytes were positively selected (MACS CD14 + microbeads; Miltenyi Biotech, Surrey, UK) and seeded at 0.25 × 106 cells/well into 96-well plates containing dentine discs, 1 × 106 cells/well into 48-well plates containing cartilage pieces, or 1 × 106 cells/well into 24-well plates. After overnight adhesion, dentine and cartilage was transferred to new wells. Osteoclast differentiation was induced with 25 ng/ml M-CSF (R&D Systems, Abingdon, UK) and 50 ng/ml RANKL (Peprotech, London, UK) in α-MEM containing 10% FBS, 50 IU/ml penicillin, 50 μg/ml streptomycin sulphate and 2 mM L-glutamine. Differentiation medium was refreshed every 2–3 days for 10–13 days. For inhibitor experiments, mature osteoclasts were treated with bafilomycin (Cell Signalling Technology, Hitchin, UK), E64 (Cambridge Bioscience, Cambridge, UK), GM6001 (Selleckchem, Munich, Germany) or recombinant human TIMP1 (R&D Systems).
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10

Chemical Compounds for In Vitro Studies

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MLN8237 and GM6001 were purchased from Selleck Chemicals. Cisplatin was purchased from Sigma-Aldrich. All chemicals were dissolved in dimethyl sulfoxide (DMSO) for in vitro studies.
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