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3 protocols using rabbit anti pdgfr

1

Comprehensive Antibody Panel for Cell Identification

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The following primary antibodies were used for IHC or western blot analyses: mouse anti-GPR56 (H11) (1:200)40 (link) and rabbit anti-GPR56 (199) (1:200)19 (link), rabbit anti-MBP (Millipore; Cat #AB980, 1:200), rat anti-MBP (Abcam, Cat# ab7349), mouse anti-O4 (Millipore; Cat #MAB345, 1:400), rabbit anti-NG2 (Millipore; Cat #AB5320, 1:200), goat anti-Sox2 (Santa Cruz; Cat #sc-17320, 1:400), rabbit anti-Olig2 (kind gift from Charles Stiles, 1:10,000), rat anti-PDGFR (BD Bioscience; Cat #558774, 1:500), rabbit anti-PDGFR (Cell Signaling Technologies; Cat #3164S, 1:500) and rat anti-Ki67 (Affymetrix eBioscience; Cat #14-5698-80, 1:100), rat anti-BrdU (Accurate Chemical and Scientific Corporation; Cat #OBT0030S, 1:100), rabbit anit-PLP (Abcam, Cat #ab28486, 1:1000), mouse anti-RhoA (Cytoskeleton, Cat# ARH03-A, 1:500), mouse anti-CDK2 (Santa Cruz; Cat #sc-6248, 1:1000), mouse anti-β-actin (Sigma, Cat #A5044, 1:5000), and mouse anti-Ki67 (BD Bioscience; Cat #550609, 1:100). Secondary antibodies were goat anti-mouse or anti-rat conjugated with either Alexa 488 (Life Technologies, 1:1000) or Alexa 546 (Life Technologies,1:1000) and goat anti-rabbit conjugated with Alexa 546 or 555 (Life Technologies, 1:1000), goat anti mouse or rabbit IgG-HRP (Sigma, Cat# A4416 or A6154, 1:3000).
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2

Protein Expression Analysis Protocol

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Cells were lysed in RIPA buffer (Merck Millipore, Vimodrone, MI, Italy) containing PMSF (Sigma-Aldrich, Saint Louis, Missouri, USA), sodium orthovanadate (Sigma-Aldrich), and protease inhibitor cocktail (Calbiochem, San Diego, CA, USA), sonicated and centrifuged 15 min at 14,000 rpm at 4 °C. Equal amounts of protein were separated on Bolt® Bis-Tris Plus gels, 4–12% precast polyacrylamide gels (Life Technologies, Monza, Italy). Fractionated proteins were transferred to a PVDF membrane using the iBlot 2 System (Life Technologies). Following 1 h blocking with Odyssey blocking buffer (Dasit Science, Cornaredo, MI, Italy), membrane was probed overnight at 4 °C with mouse anti -N-Cadherin and mouse anti-E-Cadherin (1:1000, DAKO, Glostrup, Denmark); rabbit anti-EGFR, (1:500 Cell Signalling Technology, Danvers, MA, USA); rabbit anti-PDGFR, rabbit anti p-p70S6k, rabbit anti-pERK, rabbit anti-ERK (1:1000, Cell Signalling Technology, Danvers, MA, USA), and 1 h at room temperature with goat anti-rabbit IgG Alexa Flour 750 antibody (Invitrogen, Monza, Italy). Membrane was visualised by the Odyssey Infra-red Imaging System (LI-COR® Bioscience, Lincoln, Nebraska USA). Anti α-tubulin antibody (1:2000, Sigma-Aldrich) was used to assess equal amount of protein loaded in each lane.
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3

Western Blot Analysis of Signaling Proteins

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Protein lysates from each cell sample were collected, quantified with the Bradford assay, and boiled with loading buffer for 10 min. A total of 10 μg of protein was used to run in 10% or 12% SDS-PAGE gel, and transferred electrophoretically to a PVDF membrane using a standard method. After blocking with skimmed milk, membrane was incubated with rabbit anti-PTPN2 (1 : 1000), rabbit anti-PDGFR (1 : 2000), p-PDGFR (1 : 1000), Akt (1 : 3000), p-Akt (1 : 2000), Erk (1 : 3000), p-Erk (1 : 3000), or GAPDH (1 : 5000) purchased from Cell Signaling Technology (Denvers, MA, USA), then incubated with secondary rabbit antibodies (1 : 10000, Cell Signaling Technology), and visualized using the enhanced chemical luminescence method.
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