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9 protocols using nafamostat mesylate

1

Transwell Assay for Endothelial Barrier Function

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Mouse brain endothelial bEND.3 cells (5 × 105 cells in 500 µL DMEM media, passage number 4 or 5) were grown for 1 day on 3 μM transwell inserts (BD Biosciences; Corning, #353492) until confluency and tight junctions were well-established. Media were removed from the transwells and the supernatants harvested from various experimental conditions of BMMCs were added. Barrier function of the endothelial monolayers was measured as TEER using a Millicell ERS Ohmmeter with the probe included by the manufacturer (Millipore, Burlington, MA; MERS00002). TEER readings were taken at baseline, 3h, 6h, and 24 h after introduction of stimulus. For transwell assays using BMMCs, an MOI of 1 was used. For some groups, chymase-specific inhibitor (TY-51469; 100 μM) and tryptase-specific inhibitor (nafamostat mesylate; 10 μM, Sigma-Aldrich, St. Louis, MO; #82956-11-4) were incubated with BMMCs during JEV activation. At 24 h after bEND.3 cell stimulation with the various experimental supernatants, FITC-dextran was added to the upper compartments at 0.5 mg/mL for 1 h, then the medium was removed from the lower compartments for fluorescence measurement. Fluorescence was measured using a plate reader (Tecan Infinite M200; excitation wavelength of 492 nm and emission wavelength of 520 nm).
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2

Lysosomal pH Regulation Using Bafilomycin A1

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Bafilomycin A1 was obtained from InvivoGen (San Diego, CA, USA). Stock solutions of 100 μM (160 μl DMSO added to a 10 μg Bafilomycin A1) Bafilomycin A1 were prepared. In control experiments, equal amounts of DMSO (vehicle control) as for the Bafilomycin A1-treated cells were added. The pH probe Lysosensor Blue DND-167 was purchased from ThermoFisher Scientific (Waltham, MA, USA). Nafamostat mesylate was obtained from Sigma-Aldrich (Steinheim, Germany).
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3

Evaluation of Serine Protease Inhibitors

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Camostat mesylate, Gabexate mesylate and Nafamostat mesylate were obtained from Sigma Aldrich and TCI chemicals, India. Firstly, the native rLmHtrA (1 mg/mL) was incubated with different concentrations of inhibitors (1 to 25 mM) at 4 °C for 4 h, followed by the addition of substrate casein (1 mg/mL) or Fg (1.5 mg/mL) and the samples were incubated overnight at 37 °C. The rLmHtrA directly incubated with substrates and the rLmHtrA incubated with PMSF, the known serine protease inhibitor, and then incubated with substrates were used as controls. Finally, at the end of the incubation, the samples were analyzed using a 10% SDS-PAGE gel run at a constant voltage of 150 V and stained with Coomassie Brilliant Blue R-250. In the initial screening, nafamostat exhibited inhibition at 2 mM and hence further screening was carried out in the range of 0.15 mM to 2 mM.
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4

Antibodies and Reagents for Cellular Analysis

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Rabbit polyclonal anti-histone H2A, H2B, H3 and H4, mouse monoclonal anti-tryptase [AA1], rabbit monoclonal anti-lamin B1, rabbit polyclonal anti-hnRNP A2B1 antibodies were from Abcam (Cambridge, UK). Rabbit polyclonal anti-histone H1 antibody and PrestoBlueTM cell viability reagent were from Invitrogen (Carlsbad, CA). Goat polyclonal to β-actin was from Santa Cruz Biotechnology (Santa Cruz, CA). Rabbit antisera to mMCP6 and CPA3 were as described49 (link). Recombinant human skin β-tryptase and human lung β-tryptase were from Promega (Madison, WI) or prepared as described39 (link). Recombinant human hnRNP A2B1 was from Abcam. Click-iTTM Plus EdU Pacific BlueTM flow cytometry cell proliferation kit, ActinRedTM 555, ActinGreenTM 488, NucBlue Hoechst 33342 and wheat germ agglutinin AlexaTM 488 were from Molecular Probes (Oregon, OR). AnnexinV-FITC was from BD bioscience (San Jose, CA). DRAQ7TM was from Biostatus (Shepshed, UK). AC 55541 was from Tocris bioscience (Bristol, UK). Dynasore hydrate, Nafamostat mesylate, Heparin sodium salt and Trypan Blue solution were from Sigma-Aldrich (Steinheim, Germany).
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5

Evaluating Antiviral Compound Efficacy

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PD, U18666A, E64d, chloroquine, camostat mesylate, nafamostat mesylate, ginsenoside Rb1, ginsenoside Rg3, ginsenoside mix, glycyrrhizin, isoliquiritigenin, echinocystic acid, oleanolic acid, ursolic acid, and methyl-beta-cyclodextrin were purchased from Sigma-Aldrich Co. (USA).
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6

Mefloquine-Induced Mast Cell Apoptosis

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Purified human skin MCs were seeded in a 96‐well plate in RPMI (Gibco/Thermo Fisher Scientific) supplemented with 10% heat‐inactivated FCS, 4 mM L‐glutamine, and antibiotics. Mefloquine (20 μM) was added to selected wells, and the plate was incubated for 2 h at 37°C in a humidified atmosphere of 5% CO2 in air. The effect of mefloquine on MC apoptosis was evaluated by flow cytometry analysis (below). To delineate the mechanisms behind the mefloquine‐induced apoptosis, MCs were pretreated with the pan‐caspase inhibitor Z‐VAD‐FMK (AH Diagnostics), the serine protease inhibitor Pefabloc or the tryptase inhibitor nafamostat mesylate (Sigma‐Aldrich) before stimulation with mefloquine. The ability of mefloquine to activate caspases was tested by staining of mefloquine‐treated MCs with Caspase 3/7 Green Detection Reagent (Invitrogen) and evaluation of the induced FITC fluorescence by flow cytometry. To assess whether the granule acidity has an impact on the responsiveness of MCs to mefloquine‐induced cell death, cells were pretreated with the V‐ATPase inhibitor bafilomycin A1 (Sigma‐Aldrich) at 10 nM before stimulation with mefloquine.
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7

SARS-CoV-2 and MERS-CoV Inhibition Assay

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Camostat mesylate, nafamostat mesylate, bafilomycin A, chloroquine, and E64d were purchased from the Sigma-Aldrich Corporation (St. Louis, MO). The EMC/2012 strain of MERS-CoV was provided by Bart Haagmans and Ron Founchier (Erasmus Medical Centre, Rotterdam Netherlands). The USA-WA1/2020 strain of SARS-CoV-2 was obtained from the BEI Resources Repository (https://www.niaid.nih.gov/research/bei-resources-repository; catalog no. NR-52281).
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8

Histone Modification Antibody Protocol

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UNC-0638 (cat no U4885) was from Sigma-Aldrich (Steinheim, Germany), UNC-1999 (cat no S7165) from Selleckchem (Houston, TX), H-Leu-Leu-OMe (LLME) (cat no 4000725.0005) from Bachem (Bubendorf, Switzerland). Nafamostat mesylate (cat no N0289), staurosporine (cat no S4400), mefloquine (cat no M2319), Pefabloc SC (cat no 11429868001), pepstatin A (cat no 516481) and E-64d (cat no E8640) were from Sigma-Aldrich (Steinheim, Germany). Rabbit anti-H3K9me2 antibody (cat no 07-441) was from EMD-Millipore (Darmstadt, Germany). Rabbit anti-H3K4me1 (cat no 5323S) monoclonal antibody was from Cell Signaling Technology (Danvers, MA). Rabbit anti-histone 2A (H2A) (cat no ab177308), H2B (cat no ab1790), H3 (cat no ab1791) and H4 (cat no ab177840) antibodies, mouse anti-H3K27me3 (cat no ab6002) monoclonal antibody and rabbit anti-H3S10p (cat no ab272166) polyclonal antibody were from Abcam (Cambridge, UK). A mouse monoclonal antibody to β-actin (cat no sc-517582) was from Santa Cruz Biotechnology (Santa Cruz, CA). Rabbit anti-H2BS14p polyclonal antibody (cat no PA5-105775) was from Invitrogen (Eugene, OR). Rabbit anti-H2BK16ac (cat no 39121) was from Active Motif (Carlsbad, CA).
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9

Screening Small Molecules for Antiviral Activity

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Platycodin D, U18666A, E64d, chloroquine, camostat mesylate, nafamostat mesylate, ginsenoside Rb1, ginsenoside Rb3, ginsenoside mix, glycyrrhizin, isoliquiritigenin, echinocystic acid, oleanolic acid, ursolic acid, and methyl-beta-cyclodextrin were purchased from Sigma-Aldrich Co (USA).
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