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8 protocols using tgf β

1

MTT Assay for Cell Viability

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3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2-H-tetrazolium bromide (MTT), dimethyl sulfoxide (DMSO), and SB431542 were from Sigma Chemical Co. (St. Louis, MO, USA); TGF-β was provided by Novoprotein Scientific Inc. (Shanghai, China); IFITM3 primary monoclonal antibody were from Sigma Chemical Co.; P38-MAPK and p-P38, Smad and p-Smad, CDC2 and P-CDC2, mTOR and p-mTOR primary monoclonal antibodies were purchased from Cell Signal Technology, Inc (Beverly, MA, USA); E- and N-cadherin primary monoclonal antibodies were from Abcam Ltd. (Cambridgem MA, USA).
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2

Fibrotic Model with MRC5 Cells

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Human embryonic lung fibroblast MRC5 cell line was purchased the Type Culture Collection of the China Academy of Sciences, Shanghai, China. MRC5 was maintained at 37 ℃ in MEM supplemented with 10% fetal bovine serum and 100 U/ml penicillin and 100 μg/ml streptomycin in a humidified atmosphere of 5% CO2. Cells were used up to the fifth passage and were seeded onto different types of plates for further experiments once they reached approximately 75% of the desired cell density.
Fibrotic model was created in vitro by utilizing 10 ng/mL TGF-β (Novoprotein, Shanghai, China). The cells were pretreated with 10 mM lactate, 10 μM Mdivi-1, 20 μM Ulixertinib, 20 nM Mito-TEMPO and 10 μM DPI, all of which purchased from MedchemExpression ((New Jersey, USA).
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3

Modulating Macrophage Metabolism for M1/M2 Polarization

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Mouse Mφ RAW 264.7 cells and the human monocytic THP-1 cells were cultured in control RPMI 1640 (31800105, Gibco, La Quinta, CA, USA) supplemented with 10% heat-iNACtivated FBS (Gibco), penicillin (50 U/ml), and streptomycin (50 U/ml). M0-Mφs were stimulated with LPS (40 ng/ml, Sigma-Aldrich, St. Louis, MO, USA) for M1 activation and with mouse recombinant IL-4 and TGF-β (20 ng/ml each, Novoprotein, Shanghai, China) for M2 activation. To block glutaminolysis, M1-Mφs were treated with BPTES (10 nM, CSN Pharm, Coquitlam, BC, Canada) for 24 hours. For GLN metabolism anaplerosis, M1-Mφs cultured in GLN+ or GLN medium were supplemented with dimethyl αKG (0.8 mM, Sigma-Aldrich) or NAC (0.5 μM, Beyotime, Beijing, China) for 24 hours.
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4

Monitoring CSR in Stimulated B Cells

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CH12F3 cell lines were stimulated with anti‐CD40 (16‐0402‐86; ebioscience; RRID: AB_468947), IL4 (CK15; Novoprotein) plus TGF‐β (CA59; Novoprotein). CSR to IgA was monitored at the indicated time. Splenic naïve B cells were purified as previously described (Qiao et al, 2017 (link)) and cultured in RPMI1640 plus 15% fetal bovine serum (FBS, ExCell Bio, catalog # FSP500, Lot No.11H235). LPS (sigma; L2630‐100MG) and IL4 (CK15; Novoprotein) were used to activate splenic naïve B cells. Infected with retrovirus on Day 1; CSR to IgG1 was monitored at Day 3 and Day 4. For retroviral AID expression, the Aicda gene and its mutants were cloned into a pMX‐IRES‐GFP or pMX‐IRES‐Puro vector (Basu et al, 2008 (link)). The plasmid was co‐transfected with a packaging plasmid pCL‐10A1 (Novus Biologicals) into HEK293T cells using Ca3(PO4)2 co‐precipitation approach. Cell proliferation was monitored by cell counting with a hemocytometer. The cell viability of retroviral vector‐infected B cells was calculated by the fraction of GFP+ cells in the whole population.
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5

Culturing Human Cell Lines for Research

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Human foreskin fibroblast (HFF) and human embryonic kidney cells (HEK 293T) were cultured in Dulbecco’s modified Eagle medium (DMEM) (GIBCO, ThermoFisher, Waltham, MA, United States) supplemented with 10% pre-selected fetal bovine serum (FBS) (GIBCO, ThermoFisher, Waltham, MA, United States), 1% penicillin and streptomycin (GIBCO, ThermoFisher, Waltham, MA, United States) in a 37°C humidified incubator with 5% CO2. Human umbilical cord mesenchymal stem cells (hUCMSCs) were cultured in Dulbecco’s modified Eagle’s medium/nutrient mixture F-12 HAM (1:1) (DMEM/F12, GIBCO, ThermoFisher, Waltham, MA, United States) containing 10% FBS and 1% penicillin/streptomycin in a 37°C humidified incubator with 5% CO2.
NIH 3T3 cells were maintained in DMEM with 10% FBS and kept in a 37°C incubator with a 5% CO2 air atmosphere, and TGF-β (Novoprotein, China) was added with 2 ng/ml. The total proteins of cells were harvested 24 h post-treatment.
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6

Cardiac Fibroblast Contraction Assay

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Primary cardiac fibroblasts were transfected with H1.0 or scrambled negative control siRNA for 48 h. Fibroblasts suspended in 10% serum-supplemented DMEM/F-12 medium were seeded (0.5 × 106 cells per milliliter) on collagen gels 24 h before serum deprivation for 4 h. At the beginning of contraction, gels were released from wells using a pipette tip and treated with TGF-β (10 ng ml−1; Novoprotein, CA59) for 24 h. Primary cardiac fibroblasts transfected with Adv-GFP or Adv-GFP-H1.0-FLAG for 48 h were suspended in 10% serum-supplemented DMEM/F-12 medium, seeded (0.5 × 106 cells per milliliter) on collagen gels for 8 h and then released from wells for 24 h. Gel images were acquired by the ChemiDoc MP Imaging System (Bio-Rad). Gel area was calculated using ImageJ73 (link) and Fiji74 (link), and contraction was reported as percentage of contraction.
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7

Treg Induction from Splenic T Cells

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T lymphocytes were obtained from the spleen using the BioLegend Natural CD4 + T Cell Purification Kit (BioLegend) and then seeded on anti-CD3-coated plates at a density of 5 × 105 cells/well. CD4 + T cells and saline/MSCs/IL-1β-primed MSCs were cocultured at a ratio of 5:1. Treg cell differentiation was induced with RPMI 1640 containing 10% FBS, 3 μg/mL anti-CD28 (BioLegend), 50 ng/mL IL-2 (Novoprotein), and 5 ng/mL TGF-β (Novoprotein). After 72 h of cocultivation, CD4 + FOXP3 + Treg cells were collected and analyzed by flow cytometry.
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8

Murine Th17 Cell Differentiation and Modulation

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Murine naïve CD4+T cells were purified from the spleen of male C57BL/6 mice by magnetic cell negative selection using a mouse naïve CD4+T cell isolation kit (Miltenyi Biotec, 130-104-453), according to manufacturer’s instructions. Cells were stimulated in vitro with plate-bound anti-CD3 (BD Pharmingen, 553057) and anti-CD28 antibodies (BD Pharmingen, 553294) (both for 2 μg/mL) in RPMI 1640, supplemented with 10% heat-inactivated fetal bovine serum and 100 U/mL penicillin/streptomycin. To induce the differentiation of Th17 cells, cells were activated in the presence of 25 ng/mL IL-6 (Novoprotein, CG39), 20 ng/mL IL-23 (Novoprotein, CI18), 2.5 ng/mL TGF-β (Novoprotein, CA59). PNS, Tepp-46 (Apexbio, C4181), and SAICAR (Apexbio, C3413) were dissolved at a concentration of 10 mM in dimethyl sulfoxide (DMSO) and stored at −20 °C until use. For PNS treatment, IL-6/IL-23/TGF-β were added to each well, followed by treatment with PNS (5, 10, 20 μg/mL) and incubation for 72 h. For Tepp-46 and SAICAR treatment, cells were pre-incubated at 37 °C for 24 h with Tepp-46 (50, 100, 150 μM) or SAICAR (2, 4, 8 μM) before IL-6/IL-23/TGF-β activation. For co-treatment, cells were pretreated with SAICAR (4 μM) or Tepp-46 (100 μM) for 24 h before the condition of Th17-polarization), and treated with PNS (10 μg/mL) for another 72 h.
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