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Blazetaq sybr green qpcr mix 2

Manufactured by GeneCopoeia
Sourced in United States, China

BlazeTaq™ SYBR® Green qPCR Mix 2.0 is a ready-to-use solution for real-time quantitative PCR (qPCR) analysis. It contains all the necessary components, including a high-performance DNA polymerase, SYBR® Green I dye, and optimized buffer system, for efficient and sensitive detection of target DNA sequences.

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36 protocols using blazetaq sybr green qpcr mix 2

1

Analysis of MFG-E8 mRNA Expression

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After STC-1 cells harvesting, total RNA was extracted and reverse transcribed into cDNA with the SureScript™ First-Strand cDNA Synthesis Kit (GeneCopoeia, Rockville, MD, USA). Quantitative analysis of the MFG-E8 mRNA was performed by the RT-PCR method using the BlazeTaq™ SYBR Green qPCR Mix 2.0 (GeneCopoeia, Rockville, MD, USA). GAPDH mRNA was used as an internal control. The primer sets sequences were as follows: MFGE8 (forward) 5′-CTCTGGAGGCACAGTACATAAAG-3′, (reverse) 5′-TCAGAACATCCGTGCAACTC-3′; GAPDH (forward) 5′-GAGGTATCCTGACCCTGAAGTA-3′, (reverse) 5′-CACACGCAGCTCATTGTAGA-3′. All samples were detected in triplicate.
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2

Reverse Transcription and qPCR Analysis

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Reverse transcribe RNA into cDNA using SureScript™ First-Strand cDNA Synthesis Kit (catalogQP056, GeneCopoeia™). The reverse transcription reaction system was prepared using the following components: 1 µl SureScript RTase Mix (20x), 4 µl SureScript RT Reaction Buffer (5x), 1ug or 10ug total RNA. The whole system was replenished to 20 µl with ddH2O (RNase/DNase free). Expression levels of mRNA were determined using BlazeTaq™ SYBR Green qPCR Mix 2.0 (catalog QP031, GeneCopoeia™). QPCR reaction system was prepared using the following components: 2 µl 5xBlazeTaq qPCR Mix, 2 µl specific primers, 1-2 µl cDNA (diluted 1:20), the whole system was replenished to 10 µl with ddH2O (RNase/DNase free).
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3

RNA Extraction and RT-qPCR Analysis

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Total RNAs were extracted from RAW264.7 cells or lung tissues of mice by using UNlQ-10 Column total RNA Purification Kit (Sangon Biotech, Shanghai, China). The total RNAs were then reverse-transcribed to cDNAs by using SureScript™ First-Strand cDNA Synthesis Kit (GeneCopoeia, Guangzhou, China). Next, RT-qPCR was performed on a 7500 Real Time PCR System (Applied Biosystems, United States) according to the instructions of BlazeTaq™ SYBR Green qPCR Mix 2.0 (GeneCopoeia, Guangzhou, China). The PCR primers were synthetized by Tsingke Biotech (Chengdu, China), and the primer sequences are shown in Supplementary Table S1. Relative expression levels of target genes were calculated based on 2−ΔΔCt method. GAPDH was used as the internal control for normalization.
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4

Quantifying PLAUR Expression in DM-ILD

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Total RNA of ten DM-ILD patients and ten control subjects were isolated from peripheral blood using TRIzol reagent (15596018, Life Technologies, American). And RNA was reverse-transcribed to cDNA via the SureScript-First Strand cDNA Synthesis Kit (QP057, GeneCopoeia, Guangzhou, China). The expression of PLAUR was detected by Bio-Rad CFX96 (American) using BlazeTaq™ SYBR® Green qPCR Mix 2.0 (QP033, GeneCopoeia, Guangzhou, China). PCR amplification cycle conditions were 95°C 30 s, 95°C 10 s, 60°C 20 s, and 72°C 30 s for 40 cycles. GAPDH was used as the internal standardized reference. The relative expression level was calculated using the 2−ΔΔCt method. The specific primers were as follows: PLAUR, 5′-CGAGGTTGT GTGTGGGTTA-3’ (forward) and 5′-GGC​ACT​GTT​CTT​CAG​GGC​T-3’ (reverse); GAPDH, 5′- CGC​TGA​GTA​CGT​CGT​GGA​GTC-3′ (forward) and 5′- GCTGATGAT CTTGAGGCTGTTGTC-3′ (reverse).
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5

Quantifying Prognostic lncRNAs in Lung Adenocarcinoma

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We used reverse transcription-quantitative polymerase chain reaction (RT-qPCR) to detect the expression of the five potential prognostic lncRNAs in LUAD and normal lung tissues, according to Gan et al.19 (link) Total RNA from LUAD samples (n = 10) and adjacent tumor control samples (n = 10) was extracted using Nuclezol LS RNA Isolation Reagent (ABP Biosciences Inc., China). After determining the concentration and purity of RNA, qualified RNA was used for reverse transcription using a SureScript-First-strand-cDNA-synthesis-kit (GeneCopoeia, USA). RT-qPCR was performed on a CFX96 Real-time PCR System (Bio-Rad, USA) using BlazeTaq SYBR Green qPCR Mix 2.0 (GeneCopoeia, USA) under the following thermal cycling conditions: 40 cycles at 95 °C for 30s, 95 °C for 10s, 60 °C for 20s, and 72 °C for 30s. The 2−ΔΔCt method was used to calculate gene fold expression. The primer sequences used in this study are listed in Table 1.

RT-qPCR Primer Sequences Used in the Current Study

GeneSequence
LINC00857 FGAAAAGACACCAAACTCGG
LINC00857 RCTCATACACTCAACCCAGC
EP300−AS1 FGTGACGGCTGTGGAGGAGGG
EP300−AS1 RTTGGGAGGCTGAGATGGATG
PDZRN3−AS1 FATGTTCTACCACCCCTCGG
PDZRN3−AS1 RTTGGCTCTCGTTTCTCCTG
RP5-1102E8.3 FTTGGTAAATGACATAGGTTTGAATCTCT
RP5-1102E8.3 RGACCATTCCAAGTAAATCTGATTGTATA
RP3-525N10.2 FTAAACGAATGCCTGGGATAAACA
RP3-525N10.2 RCAAAATGACACAAAACCAAAATG
GAPDH FCCCATCACCATCTTCCAGG
GAPDH RCATCACGCCACAGTTTCCC
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6

Quantification of Inflammatory Cytokine mRNA in Mouse Ocular Tissues

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Total RNA was extracted from mouse eyes and cell lines using an RNAfast 200 total RNA rapid extraction kit (Feijie Biotechnology, Shanghai, China). After the quantity and purity were determined by NanoDrop 2000 (Thermo, Shanghai, China), 1 μg of total RNA was used to generate cDNA by miDETECT A Track miRNA qRT-PCR Starter Kit (RiboBio, Guangzhou, China). Quantitative RT-PCR analysis was performed using Blaze Taq™ SYBR Green qPCR Mix 2.0 (GeneCopoeia, Guangzhou, China) to detect the mRNA levels of interleukin (IL)-1β, IL-6, IL-8, granulocyte-macrophage colony-stimulating factor (GM-CSF), and tumor necrosis factor (TNF)-α. Primers used for qRT-PCR are listed in Table 1. The relative mRNA expression of each target gene was normalized to that of the housekeeping gene β-actin and GAPDH, and the result was fold-changed compared to the blank control group (set to 1).
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7

Prognostic Genes in ccRCC Tissue

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The mRNA expression levels of prognostic genes were detected in 10 pairs of ccRCC tissue samples and para-cancerous control tissue samples from the First Hospital of ShanXi Medical University. This study was allowed by the Ethics Committee of the First Hospital of ShanXi Medical University. All patients had approved for the use of clinical tissues for research purposes. Total RNA was isolated using TRIzol (Genecopoeia). The SureScript-First-strand-cDNA-synthesis-kit (Genecopoeia) was used for first-strand cDNA synthesis. For the analysis of the target gene mRNA levels, qPCR was performed using BlazeTaq™ SYBR ® Green qPCR Mix 2.0 according to the manufacturer’s instructions (Genecopoeia). The relative expression of mRNA was calculated by the 2−ΔΔCt method with the normalization to GAPDH. All specific primers were shown in Table 1.
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8

PBMC RNA Extraction and qPCR Analysis

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Total RNA from freshly isolated PBMCs (section 2.7) or cell cultures was extracted with TRIzol Reagent (Invitrogen, San Diego, CA, USA). The cDNA was synthesized using a SureScript™ First-Strand cDNA Synthesis Kit (GeneCopoeia, Guangzhou, China). The mRNA levels were determined by RT-qPCR with BlazeTaq™ SYBR® Green qPCR Mix 2.0 (GeneCopoeia) and GAPDH as the internal control. The primers are listed in Supplementary Table S2. Total RNA was reverse-transcribed and quantified with an All-in-One™ miRNA RT-qPCR Detection kit (QP015, GeneCopoeia). U6 small nuclear RNA was the internal control.
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9

Quantitative gene expression analysis

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Total RNA was extracted from cells by TRIzol and then reverse transcribed into cDNA by RevertAid First Strand cDNA Synthesis Kits (Thermo Fisher Scientific, MA, United States). qPCR was performed using Blaze Taq™SYBR®Green qPCR Mix 2.0 (GeneCopoeia, Maryland, United States). The target gene expression was normalized according to the internal reference gene β-actin. The primers used in this study are as follows: DDIT4 forward, 5′-GGTTTGACCGCTCCACGAG-3′ and reverse, 5′-ATCCAGGTAAGCCGTGTCTTC-3′; β-actin forward, 5′-CTACCTCATGAAGATCCTCACCGA-3′ and reverse, 5′-TTCTCCTTAATGTCACGCACGATT-3′; Rictor forward, 5′-TTCCCTTTCTTTGCTTCT-3′ and reverse, 5′-GTGTTCTGATTCGCCTGT-3′; Raptor forward, 5′-CGTAGCCGACAAGGACAGCA-3′ and reverse, 5′-CGTCAGCAGAAGCGAGCAGT-3′.
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10

Quantifying Gene Expression in Endometrial Samples

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Total RNA from 8 normal endometrium samples, 8 EU samples and 8 EC samples was isolated using Nuclezol LS RNA Isolation Reagent following the manufacturer’s instructions (ABP Biosciences Inc.). Next, total RNA was reverse transcribed into cDNA utilizing the SureScript-First-strand-cDNA-synthesis-kit (GeneCopoeia), according to the manufacturer’s protocol. qPCR was subsequently performed using the BlazeTaq™ SYBR ® Green qPCR Mix 2.0 (GeneCopoeia). The following thermocycling conditions were used for qPCR: 1 cycle at 95°C for 30 sec (initial denaturation), followed by 40 cycles of 10 sec at 95°C (denaturation), 20 sec at 60°C (annealing), and 30 sec at 72°C (extension). The sequences of the primers were listed in Table 1. The relative expression level was normalized to the endogenous control GAPDH and calculated using the 2−ΔΔCq method (27 (link)). The student’s t-test was used to compare the differences between the two groups. The two-tailed P-value < 0.05 in statistical analysis was defined as statistically significant.
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