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42 protocols using mg132

1

Transgenic Zebrafish for Spatiotemporal Imaging

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Tg(Ola.Actb:Hsa.HRAS-EGFP)vu119 (61 (link)) and Tg(acta1:mCherryCAAX) (62 (link)) were maintained by backcrossing on the AB wild-type background. Tricaine (Sigma-Aldrich) was prepared as described (60 ). Drugs were prepared in dimethyl sulfoxide (DMSO) at stock concentrations of 5 mM (rapamycin; Enzo Life Sciences) and 1 mM (MG132; AlfaAesar and BTZ; APExBIO), stored at −20 °C and diluted to 10 µM (rapamycin and MG132) or 1 µM (BTZ) in either fish water alone or Tricaine-containing fish water when used. Control groups were treated with 0.2 to 1% DMSO alone.
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2

Viral Propagation and Titration in Vero Cells

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PRV or HSV-1 were propagated and tittered in Vero cells. To infect, the cells were incubated with PRV or HSV-1 for 1 h, washed with PBS, and incubated in DMEM supplemented with 5% FBS until the times indicated. For the MG132 (ApexBio) treatment, a final concentration 20μM of MG132 was added into culture medium at 1 h post infection to allow efficient viral entry.
The Viral yield was determined by tittering in the Vero cells. Briefly, infected cell supernatants were cleared of cell debris by centrifugation. The Vero cells were infected in duplicate or triplicate with serial dilutions of supernatants for 1 h in serum free DMEM, washed with PBS, overlaid with 1× DMEM/1% agarose, and incubated at 37°C until plaque formation was observed (72 h-96 h). The cells were stained with 0.5% neutral red for 4 h-6 h at 37°C, and the plaques were counted.
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3

Inhibitor Treatment Protocols for Plant Studies

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For inhibitor studies (MG132, Sigma-Aldrich, MO63103 USA), 14-day-old seedlings were transferred to liquid MS full nutrition (+Fe) solution with MG132 (40 μM) and DMSO after 12 h and 20 h. After three days suspension cells were transferred to fresh N6D medium with MG132 (40 μM) and DMSO after 12 h and 20 h. 14-day-old seedlings were transferred to liquid MS full nutrition (+Fe) solution with MLN4924 (0 μM, 15 μM, 25 μM, 35 μM, 50 μM) (ApexBio, USA) and DMSO after seven days. MLN4924-treated materials is washed three times in sterilised water and used for further studies.
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4

Cell death initiation and imaging

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Cells were seeded in a 96-well plate with 10,000 cells per well in 200 μl complete growth medium. Eight hours prior to cell death initiation, medium was exchanged for Complete DMEM with DOX (1 μg/ml) or DMSO. Cells were subsequently treated with MG132 (4 μM, APExBio). Imaging was subsequently performed using the IncuCyte S3 (Sartorius, Göttingen, Germany; version 2021C). Nine images per well were captured, analyzed, and averaged. Cell death was assessed through measuring uptake of YoYo-1 (50 nM, Thermo Fisher Scientific) and expressed as the area of YoYo-1+ cells as a percentage of the total phase area. In experiments where zVAD-fmk and GSK’843 were used, zVAD-fmk (20 μM, APExBio) was administered 30 minutes prior to treatment with GSK’843 (20 μM, Sigma) and MG132.
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5

Examining Protein Turnover in Neurons

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Wild type (WT) and Rps23rg1 KO mouse primary neurons were treated with cycloheximide (Sigma-Aldrich, St. Louis, MO, USA) for indicated time periods. Alternatively, neurons were treated with cycloheximide in the presence of the proteosomal inhibitor MG132 (APExBIO, Houston, TX, USA) for 16 h.
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6

In Vivo Ubiquitination Assessment

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IF, IHC and WB were performed as previously described [19, 20] and all antibodies used are described in Additional le 1: Table 4. To assess in vivo ubiquitination, modi ed cells were treated with 20 μM MG132 (Apexbio; Houston, TX, USA) for 12 h before lysis, followed by western blot analysis and Co-IP."
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7

Culturing and Characterizing Breast Cancer Cell Lines

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Breast cancer cell lines (MCF-7, ZR75-30, SK-BR-3, HCC1937, MDA-MB-231 and BT-549)
and Hela were provided by the American Type Culture Collection (Manassas, VA, USA) and the SUM159PT breast cancer cell line was from Asterand Bioscience (Detroit, MI, USA).
BT-549 cells were cultured in RPMI 1640 with 10% FBS, SUM159PT was cultured in Ham's F-12 with 5% FBS, 1 μg/ml hydrocortisone, 5 μg/ml insulin and 10 mM HEPES, and the other cells were cultured in Dulbecco's modified Eagle's medium (DMEM) with 10% fetal bovine serum, 100 U/ml penicillin, and 100 μg/ml streptomycin. Cells were maintained at 37°C in a 5% CO2 incubator. Cells were routinely tested for mycoplasma contamination using the Lookout Mycoplasma PCR Detection Kit (#MP0035; Sigma-Aldrich). Cells were treated with the proteasome inhibitor MG132 (ApexBio, Hsinchu, Taiwan, China) at 10 µM to inhibit proteasome-mediated degradation and with cycloheximide (ApexBio) at 50 µg/mL to inhibit translation. All cell lines were authenticated using short tandem repeat (STR) profiling before experiments.
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8

Protein Expression and Antibody Analysis

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Antibodies specific for c-Met (#25869-1-AP); c-Cbl (#25818-1-AP); Fibronectin (#1G10F9); Vimentin (#10366-1-AP); E-cadherin (#20874-1-AP); Tubulin (#10094-1-AP); DYKDDDDK (#66008-3-Ig); β-actin (#66009-1-Ig); mTOR (#20657-1-AP) were obtained from proteintech (Wuhan, China). The Phospho-AKT (Ser473) (#4060) and AKT (#9272) antibodies were both supplied by Cell Signaling Technology (Danvers, MA). An anti-phosphotyrosine antibody was obtained from Abbkine. Antibodies used were goat polyclonal to ORP5 (Abcam, ab59016); mouse monoclonal to N-cadherin (Servicebio, GB12135); p-mTOR (59. Ser 2448) (Santa Cruz Biotechnology, sc-293133). For immunoblotting, horseradish peroxidase-conjugated secondary antibodies were obtained from Beyotime. For immunofluorescence, CoraLite488––conjugated Affinipure Goat Anti-Mouse IgG(H + L) was obtained from proteintech.
Chloroquine Sulfate and MG-132 were from APExBIO (MA, USA). Cycloheximide (CHX) was from MedChemExpress (shanghai, China).
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9

Measuring α-Arrestin Protein Stability

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The stability of GFP-tagged α-arrestins expressed from the pRS415-TEF1 promoter plasmids (see Supplemental Table S2) was assessed by immunoblotting. Cells were grown to mid-exponential growth phase (A600 0.8–1.0) at 30 °C and cells were treated with 0.1 mg/mL CHX (Gold Bio, St. Louis, MD, USA) to block new protein synthesis; equal densities of cells were harvested over time. Cell pellets were treated as indicated above in Section 2.5, and TCA whole-cell protein extracts were made, resolved by SDS-PAGE, and the GFP-tagged proteins were detected by immunoblotting. To determine the impact of proteasomal inhibition on α-arrestin protein stability, similar assays were performed in cells where the multi-drug resistance pump, Pdr5, was deleted. Cells were then treated with 100 μM MG132, a proteasomal inhibitor (APExBIO, Houston, TX, USA), for 1 h prior to the addition of 0.1 mg/mL CHX. Once again, equal densities of cells were harvested at time points post-treatment with MG132 and cycloheximide. TCA extracts were generated, proteins were resolved by SDS-PAGE and identified via immunoblotting. Quantification of proteins on membrane blots was performed using Image J software, as described in Section 2.5 above.
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10

Investigating mRNA and Protein Stability

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After 48 h of transfection, cells were treated with 5 µg/mL actinomycin D (ActD; APExBIO, Houston, TX, USA) to inhibit RNA synthesis and harvested at 0, 0.5, 1, 2, and 4 h. RNA was extracted and quantified by qRT-PCR to detect mRNA stability. To determine protein stability, cycloheximide (CHX; 20 µg/mL; APExBIO) was added to the culture medium to inhibit protein synthesis for 0, 2, 4, and 8 h, and protein was extracted and detected by western blotting. At 48 h after transfection, cells were starved overnight and exposed to 1 µg/mL MG132 (APExBIO) for 6 h to inhibit protein degradation, and protein was extracted for western blotting.
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