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25 protocols using formic acid

1

Dopamine Quantification in Ascorbic Acid

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All solvents were of high-performance LC grade. Acetonitrile, formic acid and dopamine were obtained from Sigma Aldrich (St. Louis, MO, USA). Working solutions were prepared in ultrapure water provided by a Milli-Q system (Millipore, Bedford, MA, USA). Each analytical stock solution (1 mg/ mL) was prepared in 0.111 M ascorbic acid in a 1:1 mixture solution to prevent oxidation and stored at 80 °C. A working internal standard solution (buffer A), 20 pg/μL of isoproterenol (Nacalai, Japan) was prepared in buffer B (50% Acetonitrile,0.1% formic acid, and 0.111 M ascorbic acid) immediately before analysis. Stock of 10 mg/mL dopamine standard were diluted in buffer A, followed by calibration curve in which dopamine stock was diluted in buffer A according to corresponding concentration (0.025, 0.25, 1.25, 1.5, 2.0, 2.5, 4.0 pg/μL).
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2

Immunohistochemical detection of Amyloid-β

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Five micrometer-thick coronal paraffin-embedded sections were prepared from fixed brain hemispheres. After deparaffinization and hydration, the slices were treated with formic acid (Nacalai Tesque) for 30 s for antigen activation. To inhibit the endogenous peroxidase, the brain sections were soaked in methanol with 0.1% H2O2 for 30 min. After washing with ice-cold PBS containing 0.02% Tween-20 (PBST), blocking was performed in blocking buffer, PBST with 10% goat serum (Sigma), for 30 min at room temperature. The first antibody, 82E1 (0.5 µg/ml) or 24B3 (20 µg/ml), diluted by blocking buffer was applied overnight at 4 °C. After washing with PBST, the second antibody, biotinylated mouse IgG (Vector Laboratories), diluted by blocking buffer was applied for 1 h at room temperature. The immunological signals were enhanced using an avidin biotin complex reaction kit (Vector Laboratories) including HRP-linked avidin. To visualize the signals, brain sections were treated with 3,3′-diaminobenzidine (Dojindo) solution in TBS with 0.1% H2O2. For reference, nuclei were stained with 4′,6-diamino-2-phenylindole (Dojindo). After dehydration and soaking in xylene, the brain sections were mounted with a coverslip and a reagent (Millipore).
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3

Synthesis and Characterization of MeHg Compounds

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MeHgCl (98% purity) and DMeHg (95% purity) were obtained from Sigma-Aldrich (St. Louis, MO, USA). Mercury standard solution, formic acid and methanol were obtained from Nacalai Tesque Inc. (Kyoto, Japan). Na2S and XAD-4 were purchased from FUJIFILM Wako Pure Chemical Co. (Osaka, Japan) and ACROS Organics (Fair Lawn, NJ, USA), respectively. All other reagents used were of the highest purity available. (MeHg)2S was synthesized as previously described16 (link).
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4

HPLC Analysis of Cholesterol-Containing Compounds

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HPLC was performed using a JASCO LC-2000 Plus series instrument (JASCO, Tokyo, Japan) equipped with an intelligent UV-VIS detector (UV-2075 Plus), a quaternary gradient pump (PV-2089 Plus), an intelligent column oven (CO-2065 Plus), an intelligent autosampler (AS-2057 Plus), an LC-Net II/ADC user interface, and ChromNAV data analysis software. A COSMOSIL Cholester column (4.6 × 250 mm, particle size 5 μm, Nacalai Tesque INC. Kyoto, Japan) was used for HPLC analyses at 40°C. The mobile phase was a 40:60 (v/v) mixture of 0.1% formic acid (Wako Pure Chemical Industries, Ltd., Osaka, Japan) in acetonitrile (Nacalai Tesque Inc., Kyoto, Japan) and 0.1% formic acid in water. The flow rate was 1 mL/min, the injection volume was 10.0 μL, and the detection wavelength was 343 nm. The CM peak was observed at 11.1 min.
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5

Characterization of Polysaccharide Structures

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d-(+)-Glucose, d-allose, d-galactose, Ag2CO3, L-cysteine methyl ester hydrochloride, phenyl isothiocyanate, pyridine, iPrOH, MTBE, porcine pancreatic α-amylase, acarbose, dinitrosalicylic acid, ACN and MeOH HPLC grade, and n-hexane, CHCl3, MeOH, ACN, (CH3)2CO and EtOAc technical grade were purchased from Sigma-Aldrich (St. Louis, MO, USA). Nano-pure water HPLC grade (18.2 MΩcm) was obtained from a NANO pure purification system (Barnstead/Thermolyne, Dubuque, IA, USA). Silica gel 60 F254 TLC plates, HCl and H3PO4 were purchased from EMD Millipore, Inc. (Darmstadt, Germany). Silica gel 60 Å 40-63 µm and AcOH glacial were purchased from VWR International LLC (West Chester, PA, Switzerland), while RP-C18 Cosmosil 140 and formic acid were purchased from Nacalai Tesque, Inc., (Kyoto, Japan) and Alfa Aesar (Ward Hill, MA, USA), respectively. MeOH and pyridine NMR (perdeuterated) solvents were purchased from Cambridge Isotope Laboratories (Andover, MA, USA).
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6

Ultrapure Water-Based Analytical Protocol

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Ultrapure water with a specific resistance of 18.2 MΩ/cm—produced using an Arium 611 Ultrapure Water System (Sartorius Co., Goettingen, Germany)—was used in the experiments. Methanol (high-performance liquid chromatography [HPLC] grade), formic acid, 1 mol/L hydrochloric acid, and choline chloride were purchased from Nacalai Tesque, Inc. (Kyoto, Japan). Sodium dihydrogen phosphate and disodium hydrogen phosphate were purchased from Fujifilm Wako Pure Chemical Industries, Ltd. (Osaka, Japan). ACh chloride was purchased from Kanto Chemical Co., Inc. (Tokyo, Japan). 2-Aminoethyl-trimethylammonium pivaloylamide (EN) was synthesized in our laboratory [10 (link)].
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7

Formalin Fixation and Decalcification

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The bones from the harvested joint were immediately fixed in 10% buffered formalin (Sigma-Aldrich, USA) and decalcified with 10% formic acid (Nacalai Tesque, Japan). The 10% formic acid was changed every 2 days for 10 days.
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8

Streptozotocin-based Diabetes Induction

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Streptozotocin (STZ) was purchased from Sigma-Aldrich Japan (Tokyo, Japan). Acetonitrile, H2O and formic acid were purchased from Nacalai Tesque, Inc. (Kyoto, Japan). All other chemicals were of the best grade available from commercial sources.
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9

HPLC Analysis of Ciguatoxins

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HPLC- (acetonitrile, methanol) and analytical-grade solvents (acetone, methanol, hexane, diethyl ether, ethyl acetate) were purchased from Kanto Chemical Co., Inc. (Tokyo, Japan) and Fuji Film Wako Pure Chemical Co. (Osaka, Japan). Analytical-grade reagents (formic acid, ammonium formate) were purchased from Nacalai (Kyoto, Japan). Distilled water was passed through a Milli-Q water purification system (Millipore, Bedford, MA, USA) for the preparation of LC mobile phases. CTX-1B was kindly provided from Prof. Takeshi Yasumoto of Japan Food Research Laboratories. CTX-3C, CTX-4A and CTX-4B were kindly provided from Dr. Mireille Chinain of Institut Louis Malardé.
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10

Quantification of Advanced Glycation End-Products

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CML, CEL, MG-H1, [2H2]-CML, [2H4]-CEL, and [2H3]-MG-H1 were purchased from PolyPeptide Laboratories (Strasbourg, France). CMA and [13C6]-CMA were synthesized as described previously31 (link). Pentosidine was purchased from Cayman Chemical Company (MI, USA).[2H4]-Pentosidine was purchased from Alsachim (Illkirch Graffenstaden, France). l-Hyp was purchased from Nacalai Tesque (Kyoto, Japan). [2H3]-l-Hyp was purchased from C D N Isotopes Inc., (Quebec, Canada). (5S, 5′S)-Dihydroxy lysinonorleucine was purchased from Toronto Research Chemicals (Toronto, Canada). Lysinonorleucine hydrochloride and (2S, 2′S, 5S)-5-hydroxy lysinonorleucine hydrochloride were purchased from Santa Cruz Biotechnology Inc., (CA, USA). Pyridinoline (PYD) and deoxypyridinoline (DPD) were purchased from TLC Pharmaceutical Standards (Ontario, Canada). High-performance liquid chromatography (HPLC)-grade distilled water (H2O), acetonitrile (MeCN) and formic acid were purchased from Nacalai Tesque (Kyoto, Japan). All other chemicals were purchased from Wako Pure Chemical Inc (Osaka, Japan).
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