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25 protocols using pro caspase 3

1

Analyzing Apoptosis Signaling Pathways

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The lower lobe of the left lung was homogenized in lysis buffer, and the proteins were collected. For the detection of Nrf2 and NF-κB, the cytoplasmic component and nuclear component were isolated by treating a nuclear protein extraction kit (Beyotime Biotechnology, Shanghai, China) and centrifuged at 12,000 g for 10 min at 4°C. After the protein concentration was measured by a BCA kit, 50-μg protein samples were separated by SDS-PAGE and transferred onto a PVDF membrane. The membrane was blocked in 5% non-fat dry milk, followed by incubation with pro-caspase-3 (1:8,000, Abcam, United States), cleaved-caspase-3 (1:500, Abcam, United States), pro-caspase-9 (1:800, Abcam, United States), cleaved-caspase-9 (1:1,000, Abcam, United States), Nrf2 (1:5,000, Abcam, United States), and NF-κB (1:3,000, Abcam, United States) primary antibodies overnight at 4°C. After being washed and incubated with secondary antibody (1:5,000, Zhongshan Golden Bridge Biotechnology, Beijing, China) at room temperature for 1 h, the proteins were visualized with the enhanced chemiluminescence reagent (GE Healthcare Bio-Sciences, Pittsburgh, PA, United States), analyzed using ImageJ version 1.61 software (National Institutes of Health, Bethesda, MD, United States) and normalized to β-actin and Lamin B.
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2

Resveratrol-Induced Apoptosis Regulation

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Resveratrol was purchased from Merck KGaA (Darmstadt, Germany), and it was dissolved in dimethyl sulfoxide (DMSO) to form a 10 mM stock solution. CCK8 kit and Annexin V-FITC/PI kit were obtained from Sigma-Aldrich. Dulbecco’s Modified Eagle Medium was purchased from HyClone and fetal bovine serum (FBS) was purchased from Gibco. Primary antibodies against cleaved-caspase-3 (dilution 1:1000), pro-caspase-3 (dilution 1:1000), Bcl-2 (dilution 1:1000), and β-actin (dilution 1:1000) were purchased from Abcam. PolyFect transfection reagent was obtained from Hilden (Qiagen, Germany). Dual-Luciferase® Reporter Assay System was purchased from Mannheim (Promega, Germany).
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3

Western Blot Analysis of Apoptosis and Mitochondrial Dynamics

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Proteins were resolved by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), transferred to polyvinylidene fluoride (PVDF) membranes, and blocked in 5% skimmed milk for 1 h. The membranes were then incubated overnight at 4°C with the following primary antibodies (anti-rabbit or anti-mouse): cleaved caspase3 (1 : 1,000; Affinity, China), Tom20 (1 : 1,000; BD, USA), COXIV (1 : 1,000; Affinity, China), LC3B (1 : 500; Affinity, China), P62 (1 : 1,000; Affinity, China), Bcl-2 (1 : 1,000; Affinity, China), Bad (1 : 1,000; Affinity, China), Parkin (1 : 1,000; Proteintech, USA), PINK1 (1 : 1,000; Proteintech, USA), Drp1 (1 : 1,000; Affinity, China), Mfn2 (1 : 1,000; Affinity, China), Atg-5 (1 : 800; Affinity, China), β-actin (1 : 5,000; Affinity, China), GAPDH (1 : 5,000; Affinity, China), Bcl-xl (1 : 1,000; Affinity, China), Bcl-w (1 : 1,000; Affinity, China), Bim (1 : 1,000; Affinity, China), procaspase3 (1 : 1000; Abcam, USA), and Tubulin (1 : 5,000; Affinity, China). Membranes were then incubated for 2 h with horseradish peroxidase-conjugated anti-rabbit or anti-mouse IgG secondary detection antibodies (1 : 5,000). Immunoreactivity was detected by using an enhanced chemiluminescence detection system (Beyotime, Haimen, China) and visualized on an imaging system (Kodak, Shanghai, China).
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4

Immunohistochemical Analysis of Cardiac Tissue

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Immunohistochemical staining was conducted on 4‐mm sections of heart tissue using Mff 1:500 (Abcam), phospho‐endothelial nitric oxide synthase (p‐eNOS; Ser1177) 1:200 (Abcam), intercellular adhesion molecule–1 1:500 (Abcam), vascular cell adhesion molecule–1 1:500 (Abcam), F4/80 1:500 (Abcam), and plasma albumin 1:500 (Abcam). The primary antibodies were as follows: CD31 (1:1500, Abcam), vascular endothelial cadherin (VE‐cadherin; 1:1000, Abcam), cyt‐c (1:500, Abcam), Mff (1:1000, Abcam), pDrp1 (1:500, Abcam), HK2 (1:500, Abcam), cleaved caspase3 (CL.caspase3; 1:1000, Abcam), and pro‐caspase3 (1:2000, Abcam). 4′,6‐Diamidino‐2‐phenylindole dihydrochloride (Sigma‐Aldrich, USA), lysosome stain, and a mitochondrion‐selective MitoFluor stain (Molecular Probes, USA) were used to marker the nuclear, lysosome, and mitochondria, respectively. For the cross‐linking of VDAC1, treated cells were harvested and added with dimethyl sulfoxide as a vehicle control (2%, as used in compound‐containing samples) or cross‐linked with 0.5 mm ethylene glycolbis (succinimidyl succinate) for 10 minutes at 30°C followed by 20 mm Tris‐HCl (pH 7.4) to quench the reaction. Samples were determined by SDS‐PAGE via immunoblotting.
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5

Western Blot Analysis of Cellular Proteins

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Total protein was extracted from cultured cells using radioimmunoprecipitation (RIPA) lysis solution and protein concentration was assessed. Equal amount of proteins were separated by SDS-PAGE, and then transferred onto PVDF membranes. After being blocked by 5% non-fat milk in 0.1%TBST (Tris-buffered saline), the membranes were incubated with primary antibodies overnight at 4 °C followed by incubation with HRP-conjugated secondary antibodies for 1 h. Protein signal was detected using an enhanced chemiluminescence (ECL) kit. GAPDH was used as an internal control to normalize protein levels. The primary antibodies used in this study include Bcl-2 (Abcam, Cambridge, MA, USA), BAX (Abcam), Pro-caspase-3 (Abcam), cleaved-caspase-3 (Abcam), ACAN (Santa Cruz, USA), COL2A (Santa Cruz), MMP13 (Santa Cruz), LC3 (Proteintech, Chicago, IL, USA), Beclin-1 (Proteintech), p-62 (Proteintech) and GAPDH (Santa Cruz).
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6

Protein Expression Analysis via Western Blot

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After centrifuging cells at 12,000 g for 10 min at 4 °C, we lysed them in radio-immunoprecipitation assay buffer (Beyotime, Shanghai, China) with protease and phosphatase inhibitors (Beyotime, Shanghai, China) for 30 min under the same temperature. With the help of BCA Protein Assay Kits (Beyotime, Shanghai, China), we determined the protein contents. Then protein samples were subjected to 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transblotted onto polyvinylidene difluoride (PVDF) membranes. Using the 5% skimmed milk, we blocked the antigen binding that was not specific for one and a half hours, then we cultured overnight the membranes with primary antibodies against A2M, total STAT3, phosphorylated STAT3, cleaved-caspase3, pro-caspase3, GAPDH (All from Abcam, Cambridge, UK) at 4 °C. After washing the membranes with Tris Buffer Saline Tween (TBST) three times and cultivated on them with goat anti-rabbit IgG secondary antibody (Abcam, Cambridge, UK) at room temperature for 1.5 h, we washed them again with TBST. In the end, we visualized the proteins and quantified them with an enhanced chemiluminescence kit (Tanon, Shanghai, China). We evaluated the proteins with densitometry by the software named ImageJ (National Institutes of Health, Bethesda, MD, USA).
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7

Autophagy Regulation in Esophageal Cancer

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Human esophageal squamous carcinoma cells, TE-1, were cultured in RPMI1640 supplemented with 10% fetal bovine serum and 100 mg/l streptomycin (Sigma) at 37°C in an atmosphere containing 5% CO2. The reagents used in the present study were DCA, 3-MA (both Sigma-Aldrich, St. Louis, MO, USA), adenovirus (GFP-RFP-LC3; Hanbio Shanghai, China), Lipofectamine 2000 (Invitrogen Life Technologies, Sanghai, China), and an MTT kit (Sangon Biotech, Sanghai, China). The antibodies used in the present study were Beclin-1 (Cell Signaling Technology, Inc., MA, USA), LC3-I/II, P62, Atg5, PARP, Pro-caspase-3 (all Abcam, Cambridge, UK), β-actin (Santa Cruz Biotechnology Inc., Dallas, TX USA), Akt, phospho-Akt, mTOR and p-mTOR (all Cell Signaling Technology,).
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8

Western Blot Analysis of Inflammatory and Apoptotic Markers

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Radio immunoprecipitation assay lysis buffer (Yeasen, China) was applied to extract proteins from PC-12 cells or spinal cord tissues. Protein concentration was determined with a bicinchoninic acid kit (Yeasen, China). Equal amounts of protein (30 μg) in all samples were separated using 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride films (Yeasen, China). Nonspecific protein binding was blocked using 5% nonfat milk in 0.1% Tris Buffered Saline Tween for 2 h at room temperature. Next, the membranes were incubated with primary antibodies against interleukin (IL)-6 (1:1000, Abcam), IL-1β (1:1000, Abcam), tumor necrosis factor alpha (TNF-α; 1:1000, Abcam), B-cell lymphoma-2 (Bcl-2; 1:1000, CST), Bcl-2 associated X (Bax; 1:1000, CST), pro caspase-3 (1:1000, Abcam), cleaved caspase-3 (1:500, Abcam), NOX4 (1:2000, Abcam) and GAPDH (1:1000, CST) overnight at 4°C. Next, the horseradish peroxidase-marked secondary antibody was added and incubated for 1 h. The bands were visualized with the enhanced chemiluminescent kit (Yeasen, China). The expression levels of proteins were analyzed by the Image J software (version ImageJ 1.44P; National Institute of Health) to determine gray density.
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9

Propofol Modulates Wnt/β-Catenin Pathway

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Following treatment with propofol, total protein was isolated from KGN cells using RIPA lysis solution (Beyotime Institute of Biotechnology). The BCA protein quantitative kit (Beijing Solarbio Science & Technology Co., Ltd.) was employed to measure the protein concentration in accordance with the manufacturer's instructions. Subsequently, the extracted protein samples (40 µg per lane) were loaded on 10% SDS-PAGE and transferred on PVDF membranes. The membranes were blocked with 5% skimmed milk at room temperature for 1 h and incubated with the following primary antibodies: Wnt3a (cat no. ab219412; Abcam), β-catenin (cat no. ab16051; Abcam), cleaved caspase3 (cat no. ab32042; Abcam), pro-caspase3 (cat no. ab32499; Abcam) and GAPDH (cat no. ab9485; Abcam) at a dilution of 1:1,000 overnight at 4˚C. The following morning, the membranes were incubated with the corresponding secondary antibody (cat no. ab7090; 1:2,000; Abcam) for 1 h at room temperature. The protein bands were exposed using EasyBlot ECL Kit (Shanghai BestBio) and analyzed using Image J (National Institutes of Health).
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10

Western Blot Analysis of Cellular Proteins

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Cells (48 h after transfection) were washed once with PBS and lysed in RIPA buffer (Pierce; Thermo Fisher Scientific, Inc.). Protein samples were quantified with the Pierce BCA Protein assay kit (Pierce; Thermo Fisher Scientific, Inc.) and were then boiled for 10 min in sodium dodecyl sulfate (SDS) sample buffer. Equal amounts of protein (20 µg/well) were separated by 10% SDS-polyacrylamide gel electrophoresis and transferred to nitrocellulose membrane. After blocking with 5% skim milk in 0.05% TBS-Tween-20 (v/v) for 1 h at room temperature, the membranes were incubated with the appropriate primary antibodies (at a dilution of 1:1,000) overnight at 4°C. Antibody specific to actin (C-2; cat no. 4967) was purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA); c-Myc (cat no. ab32072), active caspase-3 (cat no. ab2302), p27 (cat no. ab54563), p21 (cat no. ab7960) and pro-caspase-3 (cat no. ab32150) were purchased from Abcam. Bax antibody (cat no. 2772) was purchased from Cell Signaling Technology, Inc. Then membranes were washed once with TBS-Tween-20 and incubated with anti-mouse and anti-rabbit horseradish peroxidase-conjugated secondary antibodies (cat nos. ab131368 and ab191866, respectively; 1:5,000) for 2 h at room temperature. Protein bands were visualized by using WEST-ZOL (plus) Western Blot Detection system (Intron Biotechnology, Inc., Seongnam, Korea).
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