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37 protocols using pharmingen

1

Phenotypic Profiling of AT-MSCs

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The phenotypic profile of AT-MSCs was determined using the PE-conjugated antibodies against human antigens CD73 (catalog no. 550257, BD Pharmingen™, BD Bioscence United States), CD90 (catalog no. 561970, BD Pharmingen™, BD Bioscence United States) and CD105 (catalog no. 560839, BD Pharmingen™, BD Bioscence United States) and using the FITC-conjugated antibodies against human antigens (later referred as Lin cocktail) HLA-DR (catalog no. 555811, BD Pharmingen™, BD Bioscence United States), CD34 (catalog no. 345801, BD Pharmingen™, BD Bioscence United States), CD45 (catalog no. 345808, BD Pharmingen™, BD Bioscence United States), CD 19 (catalog no. 345788, BD Pharmingen™, BD Bioscence United States) and CD14 (catalog no. 345784, BD Pharmingen™, BD Bioscence United States) (BD Bioscience) according to protocol. At least 10 × 103 cells per sample were analyzed in a FACSCalibur cytometer (BD Bioscience). The results were analysed with use of the CellQuest Pro v.6.0 software (BD Bioscence).
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2

Multiparametric Flow Cytometry of Microglia and Macrophages

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BV2 microglia and RAW264.7 macrophage cell line were collected and washed with DPBS. FACS buffer [Dulbecco’s Phosphate-Buffered Saline (PBS) with 2% Fetal Bovine Serum, 0.09% Sodium Azide] (BD PharmingenTM, BD Biosciences, San Hose, CA, United States) were added to cells and incubated for 10 min. Next, cells were centrifuged at 250 g for 3 min, and the pellet was resuspended with 500 μl of FACS buffer. Cells were blocked with mouse Fc blocking solution (1:50, BD Biosciences) for 10 min on ice and centrifuged at 250 g for 3 min at 4°C. Cells were then stained with the following antibodies: mouse anti-CD40-FITC (1:50 MACS Miltenyi Biotec, Bergisch Gladbach, Germany) and mouse anti-CD206-PE (1:50, BD PharmingenTM, BD biosciences) for 30 min on ice. Cell suspensions were then filtered through a cell strainer with a 40-μm nylon mesh. Cell fluorescence was acquired using flow cytometry with a LSR II analyzer (BD PharmingenTM, BD biosciences). Data were analyzed using FlowJo software, version10 (FLOWJO, LLC, Ashland, OR, United States).
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3

Apoptosis Detection by Flow Cytometry

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Apoptosis (annexin V and PI double staining) was detected by flow cytometry according to the manufacturer's protocols (BD Pharmingen™, BD Biosciences, San Diego, CA, USA). Following the guidance of rules drawn by the manufacturer, staining cells with annexin V-FITC and PI was used to quantitatively evaluate apoptotic cells, while flow cytometry for detection (BD Pharmingen™; BD Biosciences, San Diego, CA, USA).
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4

Evaluating Leishmania Infection in Macrophages

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Peritoneal macrophages were infected by L. amazonensis promastigotes always at a ratio of 2 parasites per cell. Axenic cultures of promastigote forms in stationary phase were left in contact with the cells for 6 hours. After, the culture was washed with PBS pH 7.0 to remove promastigotes from the supernatant.
Experiments with pro-inflammatory stimulation used 5 μg/mL of LPS (Sigma-Aldrich, St. Louis, MO) and 2 ng/mL of recombinant mouse IFN-γ (BD Pharmingen, BD Biosciences, San José, CA). In experiments with anti-inflammatory stimulation, 2 ng/mL of recombinant mouse IL-4 (BD Pharmingen, BD Biosciences, San José, CA) were used. Cells were stimulated 6 hours after infection. The number of cells used in each experiment is described in S1 Table.
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5

Matrine's Effects on Prostate Cancer

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To determine the function of matrine on the cell cycle and apoptosis, DU 145 or PC-3 prostate cancer cells were exposed to matrine at the indicated dose and time. The cell cycle was evaluated using the Cell Cycle Detection kit according to the manufacturer's instructions, as described previously (36 (link)). Briefly, cells to be tested were fixed overnight using cold 70% ethanol and washed using cold PBS, then incubated with 40 µl RNaseA for 30 min at 37°C, with 160 µl propidium iodide in a dark room at 4°C for an additional 30 min. Cells were then measured using a flow cytometer (Accuri C6; BD Biosciences, Franklin Lakes, NJ, USA). The distribution of the cell cycle is represented as the cell percentages of G0/G1, S and G2/M. The percentage of apoptotic cells was also determined by flow cytometry after staining with 5 µl FITC-labeled Annexin V (BD Pharmingen; BD Biosciences) for 30 min at room temperature, followed by 5 µl propidium iodide (50 µg/ml) (BD Pharmingen; BD Biosciences) on ice for 5 min in a dark room (36 (link)).
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6

Plasma-Induced Skin Damage Analysis

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Histology analysis was performed for the plasma conditions at 1, 2, 3, 4, 5 L/min and delivery time 4 min. After the treatment, patch soaked with FITC labelled dextran was applied on the tissue as described before. To determine the depth and extent of skin damage the region of the skin exposed to the treatment was excised 3 h post-treatment. The excised skin was fixed in Zn fixative (BD PharmingenTM, BD Bioscience, San Diego, CA) for 24 h and then stored in 70% ethanol until embedding in paraffin. 5 μm thick sections were cut and stained with haematoxylin and eosin or Masson’s trichrome. The slides were observed with BX-51 microscope (Olympus, Hamburg, GE) equipped with a digital camera DP72 (Olympus).
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7

Quantifying Immune Cell Markers

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Cell surface markers (FITC-conjugated CD4) and intracellular cytokines (PE-conjugated Foxp3) (BD PharmingenTM; BD Biosciences, USA) were stained and measured. FACS measurements were performed on a FACS Canto II (BD Biosciences), and data were analysed using FlowJo software (Tree Star, USA).
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8

Cytotoxicity of AG solution and AG-NE

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Since exposure to UV irradiation and sunlight causes not only skin pigmentation, but also skin cancers, i.e., melanoma- and non-melanoma skin cancer, this study was conducted to determine the cytotoxicity of AG solution, Blank NE and a representative AG-NE against the A375 cells and A-471 cells via apoptosis induction by a flow cytometry technique. Both cells were seeded in 12-well plates at a density of 2 × 105 cells/well/1000 μL and incubated at 37 °C, under 5% CO2 atmosphere until confluence. They were incubated with the test samples for 24 h. After incubation, the cells were suspended in 1X binding buffer at a concentration of 105 cells/100 µL. Annexin V-FITC (4 µL) and propidium iodide (PI) (4 µL) (BD PharmingenTM, BD Biosciences, San Diego, CA, USA) were added to the cells and incubated for 15 min. Then, the binding buffer (400 µL) was added to each tube containing the cells prior to analysis by a flow cytometry instrument (BD FACSVerse™, BD Biosciences, USA) at an excitation/emission wavelength of 490/520 and 535/617 nm for FITC and PI, respectively. The fluorescent-activated cell sorting (FACS) were plotted and analyzed by BD FACSVerse™ software V. 1.0 (BD Biosciences, USA).
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9

CD152 Expression Analysis by Flow Cytometry

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For CD152 labelling (BD PharmingenTM, BD Biosciences, San Jose, CA, USA), 1 × 106 cells were washed with 1 mL PBS and incubated with Fix & Perm Medium A solution (InvitrogenTM, Carlsbad, CA, USA) for 15 min at room temperature in the dark for permeabilization of the cell membrane. The cells were then rewashed with PBS and incubated with Fix & Perm Medium B and CD152 (PE-Cy5) antibody for 30 min at room temperature in the dark. Afterwards, the cells were washed with PBS and fixed with 1% paraformaldehyde (PFA). Cell acquisition was performed using a FACS Calibur cytometer (BD Biosciences, San Jose, CA, USA), and the analysis was performed using FlowJo software (FlowJo, Ashland, TN, USA).
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10

Quantifying Tumor Angiogenesis via PCNA and CD31

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The expression of PCNA and CD31 were estimated by immunochemistry with PCNA and CD31 antibodies. Briefly, the frozen tumor tissues were fixed in acetone and washed twice with PBS. Following, the handled samples were stained with rabbit anti-mouse CD31 monoclonal antibody (1:50; Abcam, Cambridge, UK) and rabbit anti-rat PCNA polyclonal antibody (1:50; BD PharmingenTM; BD Biosciences, San Jose, CA, USA). After washing twice with PBS, samples were stained with secondary antibody combining with FITC or Rhodamine. Finally, we surveyed the cells possessing-positive property under microscope (×400) and counted automatically the number of capillaries in 5 randomly selected fields.
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