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5 protocols using mouse anti α tubulin

1

Protein Extraction and Immunoblotting Protocol

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Cells were lysed using lysis-C buffer [7 M urea, 2 M thiourea, 4% (w/v) CHAPS and 0.0002% (v/v) bromophenol blue] containing protease inhibitor (Bioman). The cells were homogenized on ice using an ultrasonic homogenizer (LABSONIC M ultrasonic homogenizer) with 60% amplitude and 0.6 cycle duration for 2 min. Cell lysate was centrifuged at 16,000 × g for 30 min at 4 °C. The supernatants were collected and measured protein concentrations with protein assay dye reagent (Bio-Rad Laboratories). Protein extracts were separated by SDS-PAGE and transferred onto a PVDF membrane (Millipore) and immunoblotted with antibodies. The membrane was blocked in 5% non-fat milk/PBST and incubated overnight with primary antibody diluted in blocking buffer at 4 °C: mouse anti-MYCN (abcam; 1:1000), rabbit anti-MTHFD2 (Genetex; 1:1000), rabbit anti-PAICS (Genetex; 1:1000), mouse anti-β-actin (Millipore; 1:5000), and mouse anti-α-tubulin (Genetex; 1:1000). The membrane was then treated with secondary HRP-conjugated antibody anti-rabbit or anti-mouse IgG (Sigma-Aldrich; 1:100,000) for 2 h at room temperature. Images were acquired using ECL substrate (BioRad) and FluorChem M (ProteinSimple).
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2

AMPK and S6 Kinase Immunoblotting

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Flies were lysed in radioimmunoprecipitation assay buffer (Thermo Fisher Scientific) and proteins were then separated by SDS‐PAGE using standard procedures (Wang et al., 2005 (link)). The antibodies used were mouse anti‐AMPK (Abcam), rabbit anti‐phospho‐AMPK (Cell Signaling), rabbit anti‐phospho‐Drosophila p70 S6 Kinase (Cell Signaling), and mouse anti‐α Tubulin (GeneTex). Protein signals were detected with horseradish peroxidase‐conjugated secondary antibodies and ECL reagent (Thermo Fisher Scientific). Immunoblots were quantified using Image J software.
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3

Immunoblotting Analysis of Oxidative Stress Markers

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Equal amounts of protein from islet or INS 832/13 cell lysates were resolved by SDS/PAGE under reducing conditions and transferred to nitrocellulose membranes. Proteins were detected using primary antibodies: mouse anti-Gapdh (anti-glyceraldehyde 3-phosphate dehydrogenase; 1:20,000; ThermoFisher Scientific, Waltham, MA, USA), mouse anti-α-tubulin (1:2,000; GeneTex, Irvine, CA, USA), rabbit anti-Txnrd1 (1:5,000; Proteintech, Rosemont, IL, USA), mouse anti-phospho-H2AX (Ser139, γH2AX ; 1:10,000; EMD Millipore, Billerica, MA, USA), rabbit anti-Nrf2 (200 ng/mL, previously described,48 (link)), and rabbit anti-HO-1 (1:1,000; StressGen, San Diego, CA, USA) Detection was performed by enhanced chemiluminescence49 (link) using species-specific HRP-conjugated donkey anti-mouse or donkey anti-rabbit ( 1:20,000) secondary antibodies (Jackson ImmunoResearch Laboratories, West Grove, PA, USA). Densitometry was determined using ImageJ software (National Institutes of Health, Bethesda, MD, USA).
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4

Western Blot Analysis of Drosophila Tau

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Heads from adult flies were collected and homogenized in lysis buffer (10 mM Tris–HCl, pH 7.4; 150 mM NaCl; 5 mM EDTA; 5 mM EGTA; 10% glycerol; 50 mM NaF; 1 mM Na3VO4,; 5 mM NaPPi; 5 mM DTT; 4 M urea with protease inhibitor cocktail) at 4 °C. Protein extracts were centrifuged at 3,000 g for 3 min at 4 °C, and the supernatants were stored at -20 °C. Lambda phosphatase (New England Biolabs) was added to the thawed protein extracts and incubated at 30 °C for 30 min. Western blotting was performed following the standard procedure45 (link). The primary antibodies were used with the following dilutions: rabbit anti-human pan tau (Dako, 1:20,000), mouse anti-tau-C3 (Invitrogen, 1:10,000), mouse anti-α-tubulin (GeneTex, 1:5,000), mouse anti-β-tubulin (Developmental Studies Hybridoma Bank, 1:5,000), mouse anti-AT8 (Thermo, 1:500), mouse anti-AT100 (Thermo, 1:500), mouse anti-ATP5a (Abcam, 1:100,000), rabbit-histone H3 (Abcam, 1:5,000), and mouse anti-syntaxin (Developmental Studies Hybridoma Bank, 1:5,000). Secondary antibodies conjugated with HRP (Jackson ImmunoResearch Laboratories) were used in 1:10,000 dilutions. All loading controls were prepared by stripping off the reagents from the original membrane and then re-immunoblotting following the standard procedures. Semiquantitative analysis of band density was performed in ImageJ.
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5

Immunoblotting of Phospho-AMPK Signaling

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Cells were lysed in radioimmunoprecipitation assay buffer (Thermo), and proteins were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes (Invitrogen), using standard procedures (Huang et al., 2015) . The antibodies used were rabbit anti-phospho-AMPK (1:1000, Cell Signaling), rabbit anti-AMPK (1:500, Abcam) and mouse anti-αtubulin (1:500, GeneTex). Protein signals were visualized with horseradish peroxidase-conjugated secondary antibodies and ECL reagent (Thermo). The intensity of each target protein band was quantified using Image J software.
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