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4 protocols using anti rabbit hrp antibodies

1

Ceramide Regulation of Cellular Stress

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Agents were purchased/obtained as follows: (1) bortezomib (Biovision, Palo Alto, CA); (2) fumonisin B1, palmitate, 4-PBA (4-phenylbutyric acid), TUDCA (tauroursodeoxycholic acid), and anti-α-tubulin, anti-HA and anti-CerS2 antibodies (Sigma-Aldrich, St Louis, MO); (3) ceramides (fatty acyl lengths C16, C18, C20, C22, and C24) and C17 ceramide (d17:1/C18:0) (Avanti Polar Lipid, Alabaster, AL); (4) anti-GRP78, anti-CHOP, anti-FAS, anti-phospho-eiF2α, anti-eiF2α, anti-PERK, and anti-SCD-1 antibodies (Cell Signaling Technology, Beverly, MA); (5) anti-SREBP-1, anti-phospho-PERK and anti-CerS6 antibodies (Santa Cruz Biotechnology, Santa Cruz, CA); (6) anti-GAPDH (glyceraldehyde 3-phosphate dehydrogenase) antibody (Millipore, Temecula, CA); (7) anti-INSIG-1 antibody (Abcam, Cambridge, MA); (8) anti-mouse-HRP (horseradish peroxidase) and anti-rabbit-HRP antibodies (Jackson Laboratory, Bar Harbor, ME).
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2

NFκB Signaling Pathway Analysis

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For analysis of NFκB signaling pathways, the BMDMs were sub-cultured in 12-well cell culture plates for 16 h, and stimulated with live Aspergillus spores at 25 MOI of infection for indicated times. Protein lysates were prepared using the lysis buffer (10-mM Tris–HCl, 150-mM NaCl, 1% Nonidet P-40, supplemented with protease and phosphatase inhibitor cocktails; Roche). Protein samples were denatured by boiling in sample loading buffer-containing SDS and 100-mM DTT for 5 min and separated in denaturing SDS-PAGE. Separated proteins were transferred to PVDF membranes and immunoblotted with rabbit antibodies against total IκBa, Phospho-IκBa. All antibodies were purchased from Cell Signaling followed by secondary anti-rabbit HRP antibodies (JacksonImmunoResearch Laboratories).
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3

Immunoblot Analysis of Protein Depletion

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Samples were combined with 5X Laemmli sample buffer (10% SDS, 50% glycerol, 300mM Tris HCl pH 6.8, 0.05% bromophenol blue, 5% beta-mercaptoethanol) and were incubated at 95°C for 10 min. The samples were run on precast 4–15% or 7.5% SDS gels (Bio-Rad) and were transferred overnight onto a nitrocellulose membrane in transfer buffer (25mM TrisHCl, 192 mM glycine, 0.1% SDS, 20% methanol) at 4°C. Blocking was performed with 5% milk in PBS for 1 hr rocking at room temperature. Antibody incubations were performed with 5% milk in TBS-T for 1 hr rocking at room temperature. Three 5 min TBS-T washes were performed before and after secondary antibody incubations rocking at room temperature. After a final PBS wash, imaging was performed using a LI-COR Odyssey.
For immunoblot detection of the HA tag in AID-HOOK and FTS-AID after auxin-mediated depletion, secondary antibody incubations were performed with anti-rabbit HRP antibodies (Jackson ImmunoResearch) and detected with chemiluminescence (Azure) for increased sensitivity. Imaging was performed using a Bio-Rad Gel Doc XR.
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4

Western Blot Analysis of Auxin-Mediated Depletion

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Samples were combined with 5× Laemmli sample buffer (10% SDS, 50% glycerol, 300 mM Tris HCl pH 6.8, 0.05% bromophenol blue, 5% beta-mercaptoethanol) and were incubated at 95°C for 10 min. The samples were run on precast 4–15% or 7.5% SDS gels (Bio-Rad) and were transferred overnight onto a nitrocellulose membrane in transfer buffer (25 mM Tris–HCl, 192 mM glycine, 0.1% SDS, 20% methanol) at 4°C. Blocking was performed with 5% milk in PBS for 1 hr rocking at room temperature. Antibody incubations were performed with 5% milk in TBS-T for 1 hr rocking at room temperature. Three 5 min TBS-T washes were performed before and after secondary antibody incubations rocking at room temperature. After a final PBS wash, imaging was performed using a LI-COR Odyssey.
For immunoblot detection of the HA tag in AID-HOOK and FTS-AID after auxin-mediated depletion, secondary antibody incubations were performed with anti-rabbit HRP antibodies (Jackson ImmunoResearch) and detected with chemiluminescence (Azure) for increased sensitivity. Imaging was performed using a Bio-Rad Gel Doc XR.
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