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70 protocols using spurr s resin

1

Ultrastructural Analysis of Mouse and Frog Retinas

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For processing of longitudinal sections of mouse retinas, eyecups were dissected from fixed eyes, embedded in 2.5% low-melt agarose (Precisionary, Greenville, NC) and cut into 200-µm-thick slices on a Vibratome (VT1200S; Leica, Buffalo Grove, IL). Agarose sections were treated with 1% tannic acid (Electron Microscopy Sciences, Hartfield, PA) and 1% uranyl acetate (Electron Microscopy Sciences), gradually dehydrated with ethanol and infiltrated and embedded in Spurr’s resin (Electron Microscopy Sciences). For processing of tangential sections of mouse retinas, dissected retinas were treated with 1% tannic acid (Electron Microscopy Sciences) and 1% uranyl acetate (Electron Microscopy Sciences), gradually dehydrated with ethanol and infiltrated and embedded in Spurr’s resin (Electron Microscopy Sciences). For processing of frog samples, tadpoles were treated with 1% tannic acid (Electron Microscopy Sciences) and 1% uranyl acetate (Electron Microscopy Sciences), gradually dehydrated with ethanol and infiltrated and embedded in Spurr’s resin (Electron Microscopy Sciences).
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2

Ultrastructural Tissue Processing for Rodent and Amphibian Retinas

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For processing of longitudinal sections of mouse retinas, eyecups were dissected from fixed eyes, embedded in 2.5% low-melt agarose (Precisionary, Greenville, NC) and cut into 200 µm thick slices on a Vibratome (VT1200S; Leica, Buffalo Grove, IL). Agarose sections were treated with 1% tannic acid (Electron Microscopy Sciences, Hartfield, PA) and 1% uranyl acetate (Electron Microscopy Sciences), gradually dehydrated with ethanol and infiltrated and embedded in Spurr’s resin (Electron Microscopy Sciences). For processing of tangential sections of mouse retinas, dissected retinas were treated with 1% tannic acid (Electron Microscopy Sciences) and 1% uranyl acetate (Electron Microscopy Sciences), gradually dehydrated with ethanol and infiltrated and embedded in Spurr’s resin (Electron Microscopy Sciences). For processing of frog samples, tadpoles were treated with 1% tannic acid (Electron Microscopy Sciences) and 1% uranyl acetate (Electron Microscopy Sciences), gradually dehydrated with ethanol and infiltrated and embedded in Spurr’s resin (Electron Microscopy Sciences).
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3

Transmission Electron Microscopy of Yeast Spheroplasts

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Transmission electron microscopy was performed essentially as described (Byers & Goetsch, 1991 (link)). Briefly, cells (4 ml) were treated with 10 mM DTT for 5 min and fixed overnight at 4°C in 0.2 M Na‐cacodylate buffer pH 7.4 with 3% glutaraldehyde. Cells were washed with 0.2 M phosphate citrate buffer pH 5.8 and spheroplasted using zymolyase 100T (0.2 mg/ml, amsbio). Spheroplasts were washed with 0.1 M Na‐acetate pH 6.1 and treated with 2% osmium tetroxide in Na‐acetate for 15 min. Cells were washed with water, pelleted, and overlaid with 1% aqueous uranyl acetate for 60 min. After washing with water, cells were dehydrated through an ethanol series (15, 50, 75, 95, 100%) and incubated in 2:1 (v/v) and 1:1 solutions of ethanol plus Spurr's resin (Electron Microscopy Sciences) and finally in Spurr's resin only. Cells were pelleted, transferred to BEEM capsules, and placed in a 70°C‐oven for 24 h. Ultrathin (50 nm) sections were cut with a 45°‐diamond knife (DiATOME) on a Leica EM UC6 Ultramicrotome and mounted on Copper‐Slotgrids coated with Formvar (Electron Microscopy Sciences). Images were acquired on a JEOL JEM‐1230 transmission electron microscope at 80 kV with a Gatan Orius SC1000 camera controlled by Gatan DigitalMicrograph software.
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4

Ultrastructural Analysis of Mineral Crystals

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Tissue samples were preserved in 2% paraformaldehyde and 0.5% glutaraldehyde in 0.05 M cacodylate buffer (pH 7.4) at 4 °C for 4–18 h. Following fixation, the tissues were treated with reduced osmium tetroxide followed by dehydration in ethyl alcohol. The Spurr’s resin (Electron Microscopy Sciences) was prepared and mixed 1:1 with propylene oxide and incubated overnight on a rotator. A change of Spurr’s resin:propylene oxide at 3:1 was made, and samples were infiltrated overnight. The final embedding was completed in pure Spurr’s resin (hard mixture) for 12–18 h and polymerized at 60 °C. Embedded samples were thin-sectioned (60–80 nm thickness) for electron microscopy using a diamond knife (Diatome) on a Reichert Ultracut E and analyzed using a Philips CM-12 transmission electron microscope at 80 kV accelerating voltage. Mineral crystal size and arrangement were studied by tilting the specimen stage through 0–20° of tilt and/or by darkfield imaging [19 (link)]. Individual crystals could be measured in the darkfield mode and by using the 002-diffraction line from selected-area diffraction.
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5

Ultrastructural Imaging of C6/36 Cells

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Electron microscopy used in this study followed a previously described method [28 (link)]. Briefly, C6/36 cells seeded on the dish were immediately fixed with a mixture of 2% (v/v) glutaraldehyde and 2% paraformaldehyde in 0.1 M cacodylate buffer (pH 7.4) overnight at 4°C. After cells were postfixed in 1% (w/v) osmium tetroxide in 0.1 M cacodylate buffer for 2 h at room temperature, they were washed with 0.2 M cacodylate buffer three times. Again, cells were washed with 0.2 M cacodylate buffer three times and then dehydrated through an ascending graded series of ethanol. Cells were embedded in situ with Spurr's resin (Electron Microscopy Science, Hatfield, PA, USA), followed by polymerization at 70°C for 72 h. Trimmed blocks were sectioned with an ultramicrotome (Reichert Ultracut R, Leica, Vienna, Austria), and the ultrathin sections were stained with saturated uranyl acetate in 50% ethanol and 0.08% lead citrate in sequence. Selected images were observed and photographed under a transmission electron microscope (JEOL JEM-1230, Tokyo, Japan) at 100 kV.
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6

Ultrastructural Analysis of Hornwort Sporophytes

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Sporophytes of hornworts were dissected, fixed in 2% v/v glutaraldehyde in 0.05 M Na2HPO4 (pH 7.2), washed in buffer, post-fixed in 1% (w/v) OsO4 (15 min), rinsed in distilled water, and dehydrated in a graded ethanol series ending with 3 changes of 100% ethanol. Fixed tissue infiltrated in Spurr’s resin (Electron Microscopy Sciences, Hatfield, Pennsylvania, USA), was embedded in Beem® capsules and thermal cured in a 65° C oven. Tissue in London Resin White (LR White) (London Resin Company, Berkshire, UK) was infiltrated slowly over 4d by increasing percentage of resin to ethanol. Plant material was placed in molds with fresh resin and cured for 2d at 65°C. Semithin sections (250–750 nm) were mounted on glass slides and stained with 1.5% toluidine blue in distilled water to monitor for stage of development using light microscopy. Thin sections (90 nm) were collected onto 200 mesh Ni grids and post-stained with uranyl acetate (UA) for 3 min and Reynold’s lead citrate (Pb) for 30 sec. Samples were viewed and micrographs were digitally collected in an Hitachi H7650.
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7

Ultrastructural Analysis of Remyelination

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Mice were killed with 150 mg/kg pentobarbital i.p. (Esconarkon; Streuli Pharma AG) and sciatic nerves or spinal cords were fixed in situ (sciatic nerves) or by perfusion (spinal cords) with 4% paraformaldehyde (PFA) and 3% glutaraldehyde in 0.1 M phosphate buffer, pH 7.4. Fixed tissues were post-fixed in 2% osmium tetroxide, dehydrated through a graded acetone series40 (link), and embedded in Spurr’s resin (Electron Microscopy Sciences). Ultrathin sections (70-nm thick) were cut. G-ratio (diameter of axon: diameter of axon+myelin) analyses were done at 12 mm distal to the lesion site for sciatic nerves and in the lesion site for spinal cords (g ratio average of 60–250 axons calculated per animal). To delineate the lesion site in the spinal cord and identify remyelinated axons, the g-ratio was calculated. Axons with a g-ratio above or equal to 0.835 were classified as remyelinated axons. This g-ratio threshold value was defined after calculating the g-ratio of axons in non-lesioned mouse spinal cords, where axons with the thinnest myelin sheath had a g-ratio under or equal to 0.83. No contrasting reagent was applied. Images were acquired using a Philips CM 100 BIOTWIN equipped with a Morada side-mounted digital camera (Olympus).
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8

Retinal Tissue Preparation for Microscopy

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Mice were deeply anesthetized transcardially perfused with 2% paraformaldehyde and 2% glutaraldehyde in 0.05% calcium chloride in 50 mM MOPS (pH 7.4).35 The eyes were enucleated and fixed for an additional 2 hours in the same buffer at RT. For thin plastic retinal sections, eyecups were cut in half through the optic nerve and embedded in Spurr’s resin (Electron Microscopy Sciences). For light microscopy, 500 nm thin retinal cross sections were cut and stained with methylene blue, as described in.34, 36 For electron microscopy, 70 nm thin sections were cut, placed on copper grids, and counterstained with 2% uranyl acetate and 3.5% lead citrate (19314; Ted Pella). The samples were imaged on a JEM‐1400 electron microscope (JEOL) with a digital camera (Orius, Gatan).
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9

Immunoelectron Microscopy of Striatal Tissue

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Following immunolabeling as described above, sections processed for EM viewing were rinsed in 0.1M sodium cacodylate buffer (pH 7.2), postfixed for 1 hour in 2% osmium tetroxide (OsO4) in 0.1 M sodium cacodylate buffer, dehydrated in a graded series of ethyl alcohols, impregnated with 1% uranyl acetate in 100% alcohol, and flat-embedded in Spurr’s resin (Electron Microscopy Sciences, Fort Washington, PA). For the flat-embedding, the sections were mounted on microslides pretreated with liquid releasing factor (Electron Microscopy Sciences, Fort Washington, PA). Pieces of embedded tissue were cut from the dorsolateral (motor) striatum and glued to carrier blocks, and ultrathin sections were cut from these specimens with a Reichert ultramicrotome. The sections were mounted on mesh grids, stained with 0.4% lead citrate and 4.0% uranyl acetate using an LKB Ultrastainer, and finally viewed and images captured with a JEOL 2000EX electron microscope.
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10

Microscopic Analysis of Plant Cell Walls

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For light microscopy, stem segments embedded in low viscosity (Spurr's) resin (Electron Microscopy Sciences) were cut into 1-µm-thick sections with a microtome and stained with toluidine blue [41] . Presence of lignin was visualized by staining the sections with phloroglucinol-HCl or using a UV fluorescence microscope [7] (link). Secondary wall cellulose was stained by incubating sections with 0.01% Calcofluor White [42] (link). Under the conditions used, only secondary walls exhibited brilliant fluorescence. Xylan was detected by using the monoclonal LM10 antibody against xylan and fluorescein isothiocyanate-conjugated goat anti-rat secondary antibodies [43] (link).
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