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4 protocols using rabbit anti fanca

1

Immunoblotting of Fanconi Anemia Proteins

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Immunoblots were performed as described (Bourseguin et al., 2016 (link)). The antibodies used were: mouse monoclonal anti-FANCM antibody (CV5.1, Novus biologicals, Abingdon, UK) (RRID:AB_2716711), mouse monoclonal anti-FANCD2, (Santa-Cruz Biotechnology, Dallas, Texas, USA, SC-20022) (RRID:AB_2278211), rabbit anti-FANCA (Abcam) (Bethyl Laboratories, Montgomeryn Texas, USA, Cat# A301-980A RRID:AB_1547945), mouse anti-vinculin (Abcam) (RRID:AB_11156698), Rabbit anti-CHK1 antibody from Santa-Cruz Biotechnology (SC-8408) (RRID:AB_627257), mouse monoclonal anti-Phospho-CHK1 (Ser317) antibody from Cell Signaling Technology (#2344) (RRID:AB_331488), monoclonal anti-phospho-H2AX (Ser139) antibody from Millipore (RRID:AB_309864). To transiently deplete FANCM, HEK293 cells (RRID:CVCL_0045) were transfected with 20 nmol/L of small INTERFERing RNA (siRNA) targeting FANCM, 5'-GGC-UAC-GUC-CAG-GAG-CGC-3' with 8 μL INTERFERin (Polyplus) in Opti-MEM. The protein bands were visualized and recorded using an ImageQuant apparatus. Western blot quantifications were performed using densitometry measures and the ImageJ software.
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2

Antibody Characterization for DNA Damage Response

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Antibodies were as follows: rabbit anti-FANCD2 (NB100-182; Novus) at 1:10,000; rabbit anti-FANCI (A301-254A; Bethyl) at 1:1,000; rabbit anti-SF3B1 (A300-996A; Bethyl) at 1:2,000; rabbit anti-SF3B1 (Eurogentec) at 1:1,000; rabbit anti-SF3A3 (A302-507A; Bethyl) at 1:2,000; rabbit anti-FLAG (F7425; Sigma-Aldrich) at 1:1,000; rabbit anti-DHX15 (A300-389A; Bethyl) at 1:5,000, mouse anti-SC35 (556363; BD Pharmingen) at 1:500; rabbit anti-U2AF65 (ab37530; Abcam) at 1:250; rabbit anti-pSer345(Chk1) (2348L, rabbit; Cell Signaling Technology) at 1:1,000; mouse anti-Chk1 (Sc-8408; Santa Cruz Biotechnology) at 1:1,000; mouse anti-tubulin (T5168; Sigma-Aldrich) at 1:10,000; anti-rabbit HRP-linked (7074; Cell Signaling Technology) at 1:2,500; anti-mouse HRP-linked (7076; Cell Signaling Technology) at 1:2,500; rabbit anti-Nbs1 (NB100-143; Novus Biologicals) at 1:1,000; mouse anti-PCNA (P8825; Sigma-Aldrich) at 1:3,000; rabbit anti-TopBP1 (A300-111A; Bethyl) at 1:1,000; rabbit anti-RNA-PolII (N-20) (sc-899; Santa Cruz Biotechnology) at 1:1,000; rabbit anti-TFIP11 (A302-548A; Bethyl) at 1:1,000; rabbit anti-SPF45 (A302-548A; Bethyl) at 1:1,000; rabbit anti-FANCA (A301-980A; Bethyl) at 1:2,000; and rabbit anti-PRP8 (GTX108046; GeneTex) at 1:1,000.
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3

Comprehensive Antibody Panel for Cell Analysis

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The following antibodies were used: mouse anti-MiTF (Abcam), mouse anti-FANCD2 (Santa Cruz), rabbit anti-FANCD2 (Abcam), rabbit anti-FANCA (Bethyl), mouse anti-Flag (Sigma), rabbit anti-p53 serine 15 (Cell Signaling Technology), mouse anti-p53 (Santa Cruz), rabbit anti p27 (Cell Signaling), rabbit anti-p21 (Santa Cruz), mouse anti-Cyclin-A (Abcam), rabbit anti-53BP1 (Abcam), mouse anti-gH2AX (Millipore), mouse anti-alpha-tubulin (Abcam), mouse anti-vinculin (Abcam), and goat anti-actin (Abcam).
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4

Extraction and Analysis of Cellular Proteins

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Medium and cells were harvested in PBS-containing 1 mM Na3VO4 and 1 mM NaF. Cells were pelleted before lysis in 50 mM Tris.HCl pH 7.5, 150 mM NaCl, 1% NP-40, 0.5% deoxycholate and 0.1% SDS. Samples were thawed on ice, centrifuged at 14,000 rpm for 20 min at 4 °C and supernatants quantified by BCA assay from Pierce (Leicestershire, UK). 30 μg total protein lysate was separated by reducing SDS-PAGE, transferred to PVDF (GE Healthcare, Bucks, UK) and blocked with 5% non-fat dry milk in TBS. The following primary antibodies were used: rabbit anti-HSP72 from Stressgen (Exeter, UK); rabbit anti-GAPDH, rabbit anti-ATR, rabbit anti-phospho-ATR (S428), rabbit anti-CHK1, rabbit anti-phospho-CHK1 (S345), rabbit anti-RAD51, rabbit anti-ATM, rabbit anti-phospho-ATM (S1981), rabbit anti-phospho-BRCA1 (S1524), rabbit anti-phospho-p53 (S15) and rabbit anti-phospho-H2Ax (S139) were purchased from Cell Signaling (MA, USA); rabbit anti-FANCA was purchased from Bethyl Laboratories (TX, USA). Secondary antibodies used were sheep anti-mouse IgG and donkey anti-rabbit IgG HRP from GE Healthcare (Buckinghamshire, UK). Chemiluminescent detection was carried out using immobilon western substrate from Millipore (East Midlands, UK). In vivo samples were processed using a Precellys®24 homogenizer from Bertin Technologies (Montigny, France).
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