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6 protocols using uk5099

1

Alizarin Red Staining for Calcification

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For Alizarin Red Staining for calcium deposition, HAT7 cells were cultured in 24-well plastic plates coated with collagen type I (#638-00781, Nitta Gelatin Co., Osaka, Japan) at confluence in calcification induction medium; DMEM/F12 supplemented with 10% FBS, dexamethasone (10 nM), CaCl2 (final concentration 2.1 mM) for 7 days under normoxia (21% O2) or hypoxia (5% O2), or for 5 days with UK-5099 (#S5317, Selleckchem, Randnor, PA, United States). The culture supernatant in the wells was removed, and the cells were washed with PBS, fixed with 4% PFA, and then washed three times with distilled water. Next, a 1.0% Alizarin Red S (#A5533, Sigma-Aldrich) stain was added, and the mixture was allowed to stand at room temperature for 30 min. The cells were then washed three times with PBS. The collagen gels with the cells were placed on the prepared slide and then dried at 37°C for 1 h. After drying, the gels were observed.
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2

Compound Preparation and Dosing

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BTZ, Carfilzomib (CFZ), UK-5099, CB-839 (Selleck Chemicals), and MitoTEMPO (Sigma) powder were dissolved in DMSO, filter sterilized, and stored at −20°C. For in vitro experiments, BTZ and CFZ were used at a final concentration of 2.5 to 5 nM, UK-5099 was used at a final concentration of 10 μM, CB-839 was used at a final concentration of 5 μM, and MitoTEMPO was used at a final concentration of 20 μM.
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3

Hyperthermia and Pharmacological Treatments

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Hyperthermia was applied in a 42 °C water bath at 5% CO2 for one hour, unless specified otherwise. N-acetyl-l-cysteine, Trolox, DMSO, MitoQ, and tetrathiomolybdate (all from Merck) were present from 6 h before until 24 h after the hyperthermia treatment. Elesclomol (Selleck, Houston, TX, USA), epirubicin hydrochloride, mitomycin C, gemcitabine hydrochloride, menadione, and hydrogen peroxide (all from Merck) were added 5 min prior to hyperthermia and removed 5 min afterwards. Thiram, TMT, Zn-pyrithione (Sigma, St. Louis, MO, USA), 8HQ, clioquinol, and GTSM-Cu (Medchem Express, Monmouth Junction, NJ, USA) were added 30 min prior to hyperthermia and removed 24 h after. Elesclomol was used in combination with copper(I) chloride (Merck) at an equimolar ratio unless stated otherwise. In cell viability experiments involving mono-exposure to copper, copper(I) chloride was added 5 min before hyperthermia and left until the end of the experiment. Antimycin-A (Selleck) and FCCP (Abcam, Cambridge, UK) were added 1 h prior to hyperthermia and left until the end of the experiment. DMNQ (Medchem Express) and paraquat dichloride (Merck) were added 5 min prior to hyperthermia and left until the end of the experiment. BPTES, etomoxir, and UK5099 (all from Selleck) were added 4–6 h prior to hyperthermia and removed after 24 h.
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4

Gastric Cancer Metastasis Assay

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Female BALB/c nude mice (6–8 weeks old) were purchased from the animal experiment center of Soochow University and maintained and treated under specific pathogen-free conditions. All animal protocols were approved by the Institutional Laboratory Animal Care and Use Committee at Soochow University. For the pulmonary metastasis assay, mice were injected intravenously with 2 × 106 gastric cancer cells or PBS via the tail vein. For the peritoneal metastasis assay, mice were injected peritoneally with 5 × 106 gastric cancer cells or PBS. If necessary, 10 mg/kg/day UK5099 (Selleck, S5317, C18H12N2O2) or 1 mg/kg/day R406 (Selleck, S1533, C22H23FN6O5) was peritoneally injected after 2 weeks. Mice were killed via cervical dislocation, and the lungs and peritoneal cavity were photographed at 4 weeks. The survival of mice was recorded, and a Kaplan‒Meier survival curve was generated.
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5

Metabolic Modulation in Peritoneal Macrophages

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Peritoneal macrophages were treated with 2 mM
α-cyano-4-hydroxycinnamic acid (α-CHCA), 50 μM UK5099
(Selleck), 1 mM 2-DeoxyGlucose (2-DG, Sigma), 50 μM Etomoxir (Sigma), 25
μM Orlistat (Sigma), 10 μM SB 204990 (Tocris), 10 μM TOFA
(Sigma), 2 μM C75 (Sigma), 50 μM T863 (Selleck), 50 μM
GSK3787 (Selleck) or 10 mM dichloroacetate (DCA, Sigma). After incubation for 24
h, cellular ATP concentrations were measured or mRNA abundance was measured
using qPCR.
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6

Metabolic Inhibitors in Cell Line Studies

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AZD3965 (Selleckchem, Houston, TX, USA, S7339, APexBio, Houston, TX, USA, C5049), SR13800 (Tocris, Bristol, United Kingdom, #5431), GSK2837808A (Millipore Sigma 5336600001), Hemin (Sigma Aldrich 51280), and UK5099 (Selleckchem S5317) were used as indicated. For cell line experiments, AZD3965 (100–200 μ M in DMSO), SR13800 (25–50 μ M in DMSO), GSK2837808A (100–200 μ M in DMSO), UK5099 (100  μ M in DMSO), and Hemin (20 μ M in 20 mM of NaOH, filter sterilized) were used as a final concentration. DMSO less than 5% of total volume or NaOH (20 mM, sterilized using 0.45 μm filters) were used as vehicle controls.
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