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6 protocols using anti β tubulin

1

Characterizing Pluripotency Markers

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Primary mouse anti-Oct4, anti-Sox2, and anti-Klf4 were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA); rabbit anti-mono-H3K27 from Abcam; rabbit anti-mono-,di-,tri-H3K4, rabbit anti-di-,tri-H3K27, and rabbit anti-Nanog from Cell Signaling Technology (Danvers, MA, USA); rabbit anti-Nestin from Sigma (Sigma, St. Louis, MO, USA); and anti-β-tubulin and anti-β-actin from Beyotime Institute of Biotechnology (Jiangsu, China). miRNA inhibitors were purchased from Biomics Biotechnologies (Jiangsu, China).
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2

Western Blotting Protein Analysis

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Western blotting was performed as described (58 (link)). The following primary antibodies were used: mouse anti-V5 (1:5,000; Thermo Fisher Scientific, Waltham, MA, USA), mouse anti-tubulin (1:2,000; Solarbio, Beijing, China), rabbit Anti-GAPDH (1:2,000; Solarbio), and rabbit anti-Hypusine (EMD Millipore; 1:1,000) antibodies, rabbit anti-eIF5A (1:1,000; ABclonal), rabbit anti-DHPS (1:200; abcam), rabbit anti-DOHH (1:500; Sigma-Aldrich). Secondary antibodies used were Goat Anti-Mouse horseradish peroxidase-conjugated secondary antibody (1:2,000; Beyotime, Shanghai, China) and Goat Anti-Rabbit horseradish peroxidase-conjugated secondary antibody (1:5,000). Anti-His (M1001020, Solarbio), Anti-pAKT473 (GB13012-3, Servicebio), Anti-pAKT308 (ab66134, Abcam), Anti-ATPaseβ (GL Binchem synthesis), Anti-Inx1(GL Binchem synthesis), Anti-Inx2 (GL Binchem synthesis), Anti-Inx3(GL Binchem synthesis), Anti-Inx4 (GL Binchem synthesis), Cleaved-caspase (WL02117, Wanleibio), Anti-GAPDH (M1000110, Solarbio), Anti-β Tubulin (AF1216, Beyotime), Goat Anti-Mouse (A0216, Beyotime), Goat Anti-Rabbit (A0208, Beyotime). Proteins were semi-quantified via densitometry using ImageJ (National Institutes of Health, Bethesda, MD, USA).
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3

Western Blot Analysis of Histone Modifications

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The total proteins of both cell lines were extracted and measured by Western blot analysis with the following antibodies: anti-H3K9me3 (Abcam, MA, USA; 1:1000), anti-HP1α (Abcam, MA, USA; 1:2000), anti-Ac-H3 (CST, 1:1000) and anti-β-Tubulin (Beyotime Biotechnology, 1:1000). The cells were washed triply with ice-cold PBS and treated with RIPA lysis buffer with 100 mM phenylmethanesulfonyl fluoride (PMSF) (Beyotime). An equal amount of total protein was subjected to 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, Bedford, MA, USA) then probed with primary antibodies overnight at 4°C. The membranes were then incubated for 1 h with the secondary HRP-conjugated antibodies (1:1000; Cell Signaling Technology). β-Tubulin was used for the loading control. The protein bands were visualized using the ChemiDoc XRS system (Bio-Rad Laboratories, Hercules, CA, USA) and their densities were measured using the Quantity One software (Bio-Rad Laboratories).
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4

Western Blot Analysis of Inflammatory Markers

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Equal amounts of protein were separated by 10% SDS‐polyacrylamide gel electrophoresis (PAGE) and then transferred to polyvinylidene difluoride (PVDF) membranes. The membrane was blocked for 90 min in blocking buffer (5% skim milk and 0.1% Tween 20 in phosphate‐buffered saline (PBS)). Primary antibodies were incubated overnight at 4°C, and secondary antibodies were incubated for 2 h at room temperature. The primary antibodies used were: anti‐Connexin43 (1:16000, Sigma, Cat: C6219), anti‐IL‐1β (0.2 μg/ml, Abcam, Cat: ab9722), anti‐IL‐6 (1:1000, Abcam, Cat: ab6672), and anti‐β‐tubulin (1:7500, Beyotime, Cat: AF1216) or anti‐β‐actin (1:10000, Proteintech, Cat: 66009‐1‐1g). The signal in the PVDF membranes was detected using a chemiluminescent solution (Thermo Fisher, Cat: 34580) and scanned using a Tanon‐4600 Chemiluminescent Imaging System (Tanon, China). The quantification of Western blot bands was carried out using ImageJ software version 1.53c (NIH, USA) normalized by β‐tubulin or β‐actin.
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5

Quantifying Phospho-AKT in Drosophila Fat Bodies

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Total protein from fat bodies of D. melanogaster 3rd instar larvae was isolated using protein extraction buffer (Solarbio, Beijing, China). After centrifugation at 13,000 rpm for 15 min, supernatants were subjected to SDS-PAGE and transferred to PVDF (Millipore). Membranes were incubated in blocking solution (Tris-buffered saline containing 0.1% Tween 20, 5% BSA) for 1 h. Anti-phospho-AKT (Ser505, Cell Signaling Technology, Danvers, MA), anti-AKT (Cell Signaling Technology, Danvers, MA), and anti-β-tubulin (Beyotime Biotechnology, Shanghai, China) primary antibodies and horseradish-peroxidase-conjugated anti-rabbit IgG and anti-mouse IgG secondary antibody (Solarbio, Beijing, China) were used at a dilution of 1:1000. Resulting immunoblots were visualized using a Bio-Rad Universal Hood II Gel Doc System, while densitometric analysis was performed using Bio-Rad’s Image Lab software.
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6

Protein Expression Analysis in Avian Tissues

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The tissue samples of eggshell gland, kidney, duodenum, jejunum, and ileum were put into 1 mL of RIPA buffer (Beyotime, China), and homogenized in ice bath. Then, it was centrifuged at 4°C, 12000 g for 10 min. The protein concentration was detected by a BCA protein assay kit (Beyotime, China). The protein samples were separated by 10% SDS–PAGE (Bio-Rad, Richmond, 246 CA) and then transferred to PVDF membranes (Millipore, Boston, MA), at 200 mA and 2 h at 4°C. After blocking with western blocking buffer (Beyotime, China) for 1 h at room temperature, the membranes were incubated with anti-Calbindin-d28k (Sigma, Boston, MA), anti-PMCA (Thermo, Waltham, MA), anti-β-actin and anti-β-tubulin (Beyotime, Jiangsu, China) overnight at 4°C. The membranes were then washed in 1 × TBST buffer and probed with the secondary antibody (HRP-conjugated anti-rabbit or anti-mouse IgG, Beyotime) diluted at 1:1000, at 4°C for 4 h. The bands were then visualized with Hyperfilm ECL reagent (Beyotime, Jiangsu, China) using BioSpectrum 810 (UVP LLC, Jena, Germany) (Uerlings et al., 2018 (link); Wang et al., 2020 ).
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