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28 protocols using p1754

1

Minocycline, TAK-779, and PLX3397 Treatment in Mice

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Minocycline (Sigma-Aldrich) and vehicle (PBS) were administrated i.p. at 10 mg/kg every the other day into mice at P7, and the treated mice were euthanized at P28. TAK-779 (Sigma-Aldrich) was administrated i.p. at 20 mg/kg every day into P7 mice, and the treated mice were euthanized at P28. PLX3397 (ApexBio) was dissolved in DMSO and then added immediately before using to a solution of 0.5% methyl cellulose (M0512; Sigma-Aldrich) and 1.0% Tween 80 (P1754; Sigma-Aldrich). PLX3397 was gavaged into P7 mice at 75 mg/kg every day with a 24G 1-inch stainless steel gavage needle (Braintree Scientific) as described previously (Butchbach et al., 2007 (link)). PLX3397-treated mice were euthanized at P28.
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2

Mycobacterium tuberculosis Strain Preparation

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Mtb H37Rv (Mtb WT) and H37Rv ΔRD1 were kindly provided by Prof. Douglas Young (The Francis Crick Institute, London, UK). Fluorescent Mtb strains were generated as previously reported (Lerner et al., 2016 (link)). E2Crimson Mtb was generated by transformation with pTEC19 (30178; Addgene, deposited by Prof. Lalita Ramakrishnan). Strains were verified by sequencing and tested for phthiocerol dimycocerosate positivity by thin-layer chromatography of lipid extracts from Mtb cultures. Mtb strains were cultured in Middlebrook 7H9 (M0178; Sigma-Aldrich) supplemented with 0.2% glycerol (G/0650/17; Fisher Chemical), 0.05% Tween-80 (P1754; Sigma-Aldrich), and 10% ADC (212352; BD Biosciences).
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3

Ferroptosis Inhibition Mitigates IVH Injury

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Three or more independent experiments were performed for all experiments. Animals and cell cultures for each group were randomized with the website www.randomization.com. Treatment, data collection, and data analyses were blinded by using different investigators or by masking sample labels.
For in vitro experiments, we tested different dosages of Hemin (0, 10, 50, or 100 μM) and RSL3 (0, 2, 4, 8, 16, or 32 μM) at 12 and 24 h respectively. We added 2 μM Ferrostatin-1 (Fer-1, S7243, Selleck), 100 μM Deferoxamine (DFO, Y0001937, Sigma), 100 μM Necrostatin-1 (Nec-1, N9037, Sigma), 1 mM 3-Methyladenine (3-MA, HY-19312, MCE, USA), or 10 μM Q-VD-OPh (SML0063, Sigma) at the same time with Hemin or RSL3 based on previously published work [21 (link), 48 (link)]. We treated cells with 20 μM t-BOOH (458139, Sigma, USA) for 12 h, with or without Fer-1 or 0.5 mM GSH (G4251, Sigma, USA) at the same time. Cells were collected for PI staining, TUNEL staining, immunofluorescence staining, flow cytometry, GPx4 activity assay, RT-qPCR, and RNA-seq.
For in vivo experiments, Fer-1 (2 mg/kg) or vehicle (0.1% DMSO (D1418, Sigma), 2.5% PEG300 (202371, Sigma) and 0.25% Tween80 (P1754, Sigma) in saline) was injected daily (i.p.) for the initial 7 days beginning 2 h after IVH. The assessment included behavior tests, neuroimaging, histology, and TEM.
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4

In Vivo Tumor Modeling and Drug Treatments

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C57BL/6J (000664), BALB/cJ (000651), Rag1 KO (002216) and OTI transgenic (003831) mice were obtained from the Jackson Laboratory. All mouse procedures were performed under Institutional Animal Care and Use Committee (IACUC)-approved protocols from Vanderbilt University Medical Center and conformed to all relevant regulatory standards. Mice were housed in ventilated cages with at most 5 animals per cage and provided ad libitum food and water. Mice were on 12 hour light/dark cycles which coincided with daylight in Nashville, TN. The mouse housing facility was maintained at 68–76°F and 30–70% humidity. For injectable tumor models, 8–20 week old male and female mice were used. Mice were euthanized if humane endpoint was reached (2cm dimension, ulceration, weight loss >10%). V9302 treatments were administered intraperitoneally twice daily for five days at 25mg/kg for FDG uptake or once at 75mg/kg 3hr prior to 18F-Gln injection. Rapamycin treatments were administered intraperitoneally daily for four days at 2mg/kg dissolved in 2% DMSO 30% Polyethylene Glycol 300 (Sigma Aldrich 202371), and 5% Tween 80 (sigma Aldrich P1754). Mice were randomized at first day of treatment to control or drug in an unblinded manner, with mice from the same cage receiving different treatments. Sample sizes were chosen based on prior experiments.
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5

Autophagy Induction and Inhibition in Rabbits

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RAPA was used to induce autophagy. DMSO (D4540, Sigma-Aldrich), PEG (202371, Sigma-Aldrich), and Tween 80 (P1754, Sigma-Aldrich) were added to RAPA (S1039, Selleck Chemicals, US) (2% DMSO + 30% PEG 300 + 5% Tween 80 + ddH2O). Two hours before surgery, RAPA (2 mg/kg) was injected into the marginal ear vein of rabbits in the R and R-DE groups. To maintain efficacy, the same dose of drug was injected again 36 h after surgery. CQ was given as an autophagy-lysosomal pathway inhibitor to inhibit autophagy after surgery in the CQ-DE group. CQ (c6628, Sigma-Aldrich, St. Louis, MO, USA) was dissolved in 150 mg/ml physiological saline and administered intraperitoneally at 60 mg/kg/d47 (link). The N-DE group was injected with the same volume of vehicle solvent.
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6

Senescent cell clearance in aging mice

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All drugs were mixed in 90% PBS, 5% Tween-80 (Sigma, P1754), and 5% polyethylene glycol (PEG) (Sigma, 81172) and administered to mice by intraperitoneal (i.p.) injection. For bleomycin-treated young mice, SSK1 (0.5 mg/kg) or vehicle were given consecutive two days every week for four weeks. For old mice (20-month old), SSK1 (0.5 mg/kg), gemcitabine (0.5 mg/kg), ABT263 (5 mg/kg), dasatinib (1 mg/kg) plus quercetin (10 mg/kg), fisetin (20 mg/kg) or vehicle (DMSO) were administrated for continued 3 days every 2 weeks for 8 weeks. Mice were randomized to SSK1, gemcitabine or vehicle delivered by intraperitoneal injection.
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7

Xenograft Model of UM Cells in NOD Scid Gamma Mice

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Female NOD.Cg-Prkdcscid Il2rgtm1wjl/SzJ mice (commonly known as NOD scid gamma, Jackson Laboratory, Maine), 6 to 8 weeks of age and weighing 18 to 20g, were used in the study of UM cells, housed in appropriate sterile filter-capped cages, and provided food and water ad libitum. All procedures were essentially as previously described (Feng et al., 2014b (link); Schrage et al., 2015 (link); Vaque et al., 2013 (link)). Briefly, exponentially growing cultures were harvested, washed, resuspended in RPMI 1640, and 2 × 106 viable cells were transplanted subcutaneously into the flanks of mice. For tumor growth analysis, tumor volume was assessed as [(LW2/2); where L and W represent the length and the width of the tumor]. The animals were monitored twice weekly for tumor development. Results of animal experiments were expressed as mean ± SEM of a total of tumors analyzed. To administer VS-4718 (Verastem Oncology; Needham, MA) to mice, 10mg/ml VS-4718 was prepared in 0.5% carboxymethyl cellulose (CMC) (C5678, Sigma-Aldrich; St . Louis, MO) 0.1% Tween 80 (P1754, Sigma Aldrich; St. Louis, MO) in sterile water, 100 mg/kg administered via oral gavage twice daily, control group was treated with vehicle.
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8

BALB/c Xenograft Tumor Response

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Female BALB/cAnNRj-Foxn1nu mice (Janvier Laboratory) at 5–6 weeks of age were subcutaneously injected with 1 × 106 CLB-BAR cells in serum-free medium mixed at a ratio of 1:1 with Matrigel Matrix (lot. #6140322, Corning), in a total injection volume of 100 μl, into the left flank. Once tumor volume reached an average of 150 mm3, the mice were randomized to four treatment groups, vehicle (n = 10), alectinib (n = 10), crizotinib (n = 10), and repotrectinib (n = 10). Results for repotrectinib will be presented elsewhere. Alectinib and crizotinib were administered at 20 mg/kg and 80 mg/kg bodyweight, respectively, once daily continuously for 14 days. Tumor volume was measured by calipers every second day and calculated by the following equation: V = (π/6) × L × W2 (V, volume; L, longest; W, width). The vehicle for all compounds was 1% Carboxymethylcellulose sodium salt (21902, Sigma-Aldrich, Lot # BCBN1690V), 0.5% Tween-80 (P1754, Sigma-Aldrich, Lot # BCBT0817).
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9

Mycobacterium tuberculosis Drug Resistance Assay

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Mycobacterium tuberculosis strains: H37Rv, Beijing 1192/015 and Beijing 08/00483E (multi-drug resistant, MDR) were used in the modified resazurin microtiter assay (REMA) plate method. Beijing strains 1192/015 and 08/00483E were obtained from the PHE National Mycobacterial Reference Laboratory. Beijing 08/00483E contains a single nucleotide polymorphism (SNP) at position 761155 of C→T, which has resulted in an amino acid change, S450L (corresponding to S531L with E. coli numbering), within the RIF-binding pocket. Beijing 08/00483E is also resistant to isoniazid, ethambutol, and pyrazinamide, through mutations in known resistance genes. Other reagents used were: Middlebrook 7H9 medium (BD Difco), OADC supplemented with 0.5% glycerol (24388.295, VWR Chemicals) and 0.2% Tween 80 (P1754, Sigma), CAMR Mycobacterium Medium MOD2 (CMM MOD2) (James et al., 2000 (link)), RIF (PanReac AppliChem, cat no.A2220) and 0.02% resazurin solution (10 mg resazurin sodium salt (R7017, Sigma) in 50 mL phosphate buffered saline, pH 7.4 (Severn Biotech) containing 5% Tween 80) (Gold et al., 2016 ). All the antibiotics were dissolved in methanol (322415, Sigma) to a stock concentration of 10 mg/mL.
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10

Microplastics Characterization and Suspension

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The microplastics (fluorescent green microspheres, FMG-1.3 1–5 μm, a proprietary polymer with density of 1.3 g cm-3 and a melting point of 290°C) was purchased from Cospheric LLC (Goleta, USA). The polymer composition remained unidentified after FTIR Spectroscopy; see S5 Text for details on spectra and analysis. The concentration and particle size distribution of microplastics suspended in ultrapure water were measured with a laser particle counter PC-2000 (Spectrex, Redwood City, USA). The nominal size range was confirmed the nominal mean equivalent spherical diameter of 4 ± 1 μm. To prevent adherence to the surface film and homo-aggregation of microplastic, a surfactant was added at a non-toxic concentration (0.01% w/w, Tween 80, P1754 Sigma-Aldrich) [26 (link)].
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