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Spectrofluorometer

Manufactured by Jasco
Sourced in Japan

The Spectrofluorometer is a laboratory instrument used to measure the fluorescence properties of samples. It excites the sample with a specific wavelength of light and detects the emitted fluorescence at different wavelengths. This device can provide quantitative and qualitative information about the fluorescent characteristics of the analyzed materials.

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23 protocols using spectrofluorometer

1

Monitoring FtsZ Protofilament Disruption

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FtsZ polymerization results in the formation of protofilament and monitoring the protofilament with a beam of monochromatic light causes scattering of the rays [42 (link)]. Right angle (90°) light scattering assay was used to study the ability to disrupt the protofilament formation by the selected plant extracts / D- Pinitol at 1.5 x MIC. This was monitored with JASCO Spectrofluorometer with both excitation and emission set at 400 nm. The reactions were carried out using a polymerization buffer (50 mM MoPs, 100 mM MgCl2 & 50 mM KCl). Mtb-FtsZ (12 μM) is first incubated with / without plant extracts and D- Pinitol and monitored for 300 seconds to establish the baseline (zero condition). Then, 50 seconds later 1 mM GTP was quickly added by interrupting the measurement and the scatter intensity is measured continuously for 1000 seconds. For all treatments, the time lag addition of GTP was maintained between 5 and 6 seconds [12 (link),43 ].
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2

Wastewater Analysis for SARS-CoV-2 Screening

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Wastewater samples with different quality were collected from two wastewater treatment plants (WWTP) located in Japan. Wastewater A had 11.9 mg/L of total organic carbon (TOC), 17.9 mg/L of total nitrogen (TN) and 1.6 g/L of suspended solids (SS); wastewater B had 7.4 mg/L of TOC, 10.3 mg/L of TN and 2.2 g/L of SS. Excitation-emission matrix (EEM) was analyzed by fluorescence spectrophotometer (Spectrofluorometer, JASCO, Japan) (Fig. S1). The wastewater samples were transported on ice and stored at 4 °C until analyses. All samples were processed within six hours after the sampling. The wastewater samples were confirmed to be negative for SARS-CoV-2 by RNA extraction with QIAamp Viral Mini Kit and RT-qPCR quantification using CDCN1 assay with TaqPath 1-Step RT-qPCR Kit as procedures described below.
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3

Antioxidant Activity and Protein Binding of Berry Extracts

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Fluorometric measurements were used for the evaluation of the antioxidant activity of berries extracts and their in vitro binding properties to human serum albumin. Two-dimensional (2D-FL) and three-dimensional (3D-FL) fluorescence measurements for all berry extracts at a concentration of 0.01 mg/mL were recorded on a model FP-6500, Jasco spectrofluorometer, serial N261332, Japan, equipped with 1.0 cm quartz cells and a thermostat bath. The 2D-FL was taken at emission wavelengths from 310 to 500 nm and at excitation of 295 nm.
The 3D-FL spectra were collected with subsequent scanning emission spectra from 250 to 500 nm at 1.0-nm increments by varying the excitation wavelength from 200 to 350 nm at 10-nm increments [32 (link)]. Quercetin (QUE) was used as a standard. All solutions for protein interaction were prepared in 0.05 mol/l Tris-HCl buffer (pH 7.4), containing 0.1 mol/l NaCl. The final concentration of HSA was 2.0 × 10−6 mol/l. The HSA was mixed with quercetin in the proportion HSA/extract = 1:1.
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4

Sensitive Fe2+ Detection via His-AuNCs

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The sensitivity of the His-AuNCs-based colloidal sensor towards Fe2+ was evaluated by incubating for 15 min the colloidal His-AuNCs (350 μL at initial synthesis concentration) with a solution containing Fe2+ at concentration ranging between 0 and 44 mM. Afterwards, the PL intensity of the His-AuNCs in the presence of different concentrations of Fe2+ was analyzed via a JASCO spectrofluorometer under 380 nm excitation. The degree of PL quenching was correlated with the Fe2+ concentration in order to obtain the calibration curve. The LOD was calculated using the following formula [41 (link)]: LOD=3.3SyS
where Sy is the standard deviation of the response and S represents the slope of the obtained calibration curve. The experiments were repeated three times.
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5

Fluorescence and Absorption Spectroscopy Characterization

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The fluorescence emission spectra were recorded at three temperatures 298, 305 and 310 K using JASCO spectrofluorometer. A slit width of 5 nm was used for attaining both excitation and emission spectra. An excitation wavelength of 280 nm and emission wavelength of 300–500 nm was used to obtain the fluorescence spectra. The UV–vis absorption spectra were recoded using UV-1800 spectrophotometer from Shimadzu (Japan) The spectra were recorded in the range of 200–500 nm.
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6

Fluorescence Analysis of Bioactive Compounds in Wines

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The properties of bioactive substances in wines were determined by using three-dimensional (3D-FL) fluorescence (model FP-6500, Jasco spectrofluorometer, serial N261332, Tokyo, Japan). The 3D-FL was measured at emission wavelengths between 200 and 795 nm, and the initial excitation wavelength was 200 nm. For comparison of the obtained results, catechin and gallic acid were used [71 (link)]. Standard phenolic solutions, such as gallic acid and catechin, were prepared daily by dissolving at a concentration of 10 mM in methanol and then diluting with 10 mM phosphate buffer at pH 7.4. The initial fluorescence intensities of fibrinogen, albumin and globulin were measured before their interactions with the investigated wines. The decreases in the fluorescence intensities were used in the estimation of the binding activities.
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7

Dragon Fruit Extract-HSA Binding Evaluation

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Fluorometric measurements were used for the evaluation of binding properties of dragon fruit extracts to human serum albumin (HSA). Two (2D-FL) and three-dimensional (3D-FL) fluorescence measurements for dragon fruits extracts at a concentration of 0.17 mg/mL were recorded on a model FP-6500, Jasco spectrofluorometer, Tokyo, Japan, equipped with 1.0 cm quartz cells and a thermostatic bath. The 2D-FL measurements were taken at emission wavelengths from 310 to 500 nm and at excitation of 295 nm. The 3D-FL spectra were collected with subsequent scanning emission spectra from 200 to 550 nm at 1.0 nm increments by varying the excitation wavelength from 200 to 500 nm at 10 nm increments. Gallic acid and epicatechin were used as standards [35 (link)]. 2.0 × 10−5 mol/L HSA; 0.05 mol/L Tris–HCl buffer with 0.1 mol/L NaCl (pH 7.4) were used for the reaction. The binding properties (%) for fluorescence intensity of peaks a and b were calculated by the comparison of the fluorescence intensities between initial HSA and the final one after interaction with the investigated dragon fruits extracts.
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8

EGFP-expressing UPEC Protocol

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Colony forming units (CFU) of UPEC were measured using recombinant UPEC strain expressing EGFP. The EGFP expressing recombinant UPEC strain was created by electroporation of pluxI-EGFP plasmids (streptomycin resistance, smr). Briefly, electrocompetent cells were prepared by washing cells growing in log phase with 10% glycerol at 4 °C as previously described52 (link). The plasmid was electroporated using a GenePulserXcellTM (BIORAD, USA) at 2000 V with a gap between electrodes of 1 mm, 200 Ω resistance, and 25 μF capacitance. The electroporated cells were allowed to recover in LB broth at 37 °C for 1 h. The recovered cells were plated on 1.5% LB-agar plates supplemented with streptomycin and incubated at 37 °C overnight. The EGFP fluorescence of cultures was then measured by using a spectrofluorometer (JASCO, Japan) or microtiter plate reader (BioTek, USA).
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9

Photoluminescence and Radioluminescence Characterization

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Photoluminescence measurements were performed using JASCO 6000 Spectro-fluorometer utilizing 150W Xe-tube UV light source. Radio-luminescence was measured by replacing UV light by 90Sr-90Y (7.74 kBq) beta radiation source as excitation source. Transmittance was investigated by using Analytical Jena Specord-900 photodiode array spectrophotometer.
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10

Microtubule Binding Affinity Assay

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Paclitaxel, vinblastine, or noscapine was incubated with microtubules at 37 oC, and the intrinsic fluorescence intensity of microtubules was monitored with a spectrofluorometer (JASCO) at an excitation wavelength of 295 nm. The dissociation constant (Kd) between each drug and microtubules was then determined by fluorescence titration as described previously 7 (link).
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